LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele09g0912	ATGGACATGCCTTCTTCTTCAAAAACCTCTGCTACGACCTCCCATGGTGCTTCATCTTCTCCTTACAGAGGCGTTCGCAAGAGAAAGTGGGGCAAATGGGTGTCAGAAATCCGTGAACCAGGCACCAAGACCAGAATTTGGCTCGGCAGCTTCGAGACGCCGGAGATGGCGGCAACAGCCTATGACGTCGCCGCCCTTCACTTCCGAGGTCGTGACGCCAGGCTCAACTTCCCGGAGCTCGCCCCTAGCCTTCCCCGCCCGGCGACCAACAATGCCGACGACATTCGGATGGCTGCACATGAGGCTGCTTTGAGGCTGAGGACCAATCAAGCAGCAGCAGAAGGGAACATCGACCTTGACGCTTCCGCCGGTACCGTCGGTGTCGTGGATGCCGGGGTTGCCCCAGTCACCGTGGGGCTGTCGCCGACACAGATTCAGGCAATCAATGAGTCGCCGTTGGACTCGCCGAAGATGTGGATGCAAATGTCTGAGACCCTGATGTTGGATGAACAATATCCGATGATATTTGAAGAGAATAACGATGAGACAGGGCAGAATATTCAGAGTGATTCTCTTTGGGATCCTTAA	588	0.5527	MDMPSSSKTSATTSHGASSSPYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAATAYDVAALHFRGRDARLNFPELAPSLPRPATNNADDIRMAAHEAALRLRTNQAAAEGNIDLDASAGTVGVVDAGVAPVTVGLSPTQIQAINESPLDSPKMWMQMSETLMLDEQYPMIFEENNDETGQNIQSDSLWDP	195

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele09g0912	195	SMART	rav1_2	21	84	IPR001471	GO:0003700\|GO:0006355
	Lele09g0912	195	FunFam	Ethylene-responsive transcription factor 2	20	79	-	-
	Lele09g0912	195	ProSiteProfiles	AP2/ERF domain profile.	21	78	IPR001471	GO:0003700\|GO:0006355
	Lele09g0912	195	CDD	AP2	22	80	IPR001471	GO:0003700\|GO:0006355
	Lele09g0912	195	Gene3D	AP2/ERF domain	21	79	IPR036955	GO:0003700\|GO:0006355
	Lele09g0912	195	SUPERFAMILY	DNA-binding domain	20	79	IPR016177	GO:0003677
	Lele09g0912	195	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	8	142	-	-
	Lele09g0912	195	MobiDBLite	consensus disorder prediction	1	27	-	-
	Lele09g0912	195	Pfam	AP2 domain	22	70	IPR001471	GO:0003700\|GO:0006355
	Lele09g0912	195	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lele09g0912	195	PRINTS	Ethylene responsive element binding protein signature	22	33	IPR001471	GO:0003700\|GO:0006355
	Lele09g0912	195	PRINTS	Ethylene responsive element binding protein signature	44	60	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele09g0912	Lele-ChrLele09	8415627	8416214	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele09g0912	20	195	AP2-EREBP Transcription Factor Family	AT1G71450	60.674	2.31e-64	195

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele09g0912		AP2	8.5e-13	CL0081