Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0894 ATGGTGAGAAATCCCTTTTACGACAAAAATGGAGTGAAGAAAGGTGCGTGGAGTAGAGAAGAGGATGACAAACTCAGAGCCTATGTTCTGAGACATGGTCATACCAATTGGCGTCATCTCCCCAAGCTTGCAGGTTTAGCAAGGTGCGGAAAAAGTTGCAGACTTCGTTGGATGAACTACCTGAGGCCAAATCTAAAACACGGAAACTACACTCAAGAAGAGGAACAACTTATCACCAAATACCACCAACAACTTGGGAATAAATGGTCATTGATTGCTAAGAAACTACCCGGAAGAACGGACAATGATATAAAGAACCACTGGCACAGCCACCTAAAGAAGAACTTAAACCACAATAATGACACTAGGAAGGAGGTGAAATATTTGCAGACAGCAGAATATACAGAATCTGAACGACCATGTGAGTTTATGGGTTCTGAATCAAAGAGTAGTCACCATATACTGGAAAGCTCATTGGTATCGCCCACTTCTTCAGAAACATCCTTCACCATCAAGTATTGCAGGGAAGATCAGGATCACAGTGTTGCTTCCTGGGAAACATCGTCTCAAGAACTACTAAGCTGTGATTTTTGGAGCAGACCATTTTTAGTGGAAAATACATCTGCTTATTATGATGACTTTGCCCCCCAAATTTTTGGTTACCCTTATGAGGGTACAGATTTGAGTGACCTACAAGGCATTCTAAACATATAA 714 0.4146 MVRNPFYDKNGVKKGAWSREEDDKLRAYVLRHGHTNWRHLPKLAGLARCGKSCRLRWMNYLRPNLKHGNYTQEEEQLITKYHQQLGNKWSLIAKKLPGRTDNDIKNHWHSHLKKNLNHNNDTRKEVKYLQTAEYTESERPCEFMGSESKSSHHILESSLVSPTSSETSFTIKYCREDQDHSVASWETSSQELLSCDFWSRPFLVENTSAYYDDFAPQIFGYPYEGTDLSDLQGILNI 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0894 237 Gene3D - 7 67 - -
Lele09g0894 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele09g0894 237 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele09g0894 237 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 173 - -
Lele09g0894 237 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele09g0894 237 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele09g0894 237 Gene3D - 69 139 - -
Lele09g0894 237 SMART sant 13 63 IPR001005 -
Lele09g0894 237 SMART sant 66 114 IPR001005 -
Lele09g0894 237 CDD SANT 16 61 IPR001005 -
Lele09g0894 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele09g0894 237 CDD SANT 69 112 IPR001005 -
Lele09g0894 237 FunFam Transcription factor RAX3 7 67 - -
Lele09g0894 237 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Lele09g0894 237 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0894 Lele-ChrLele09 7399063 7400439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0894 1 208 MYB Transcription Factor Family AT2G31180 46.154 1.19e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele09g0894 Myb_DNA-binding 1.1e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0894 09 7399063 7400439 Lele11g0900 11 9262193 9263579 hybridization
Lele09g0894 09 7399063 7400439 Lele12g0328 12 3293662 3294401 hybridization