LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele09g0889	ATGGGAAGAGCACCTTGCTGCGACAAAAATGGACTCAACAAGGGTCCATGGACGCCCGAGGAAGATCTAAAGCTTATCAACTACATCCAGACTCATGGACCTGGAAATTGGCGAACCCTCCCCAAGAATGCTGGTCTTCAAAGATGTGGCAAAAGTTGCCGGCTTCGATGGACAAATTACCTGAGACCTGATATCAAGAGAGGGAAATTCTCCTTTGAGGAAGAAGAGACCATCATTCAGTTGCACAGTATTATGGGAAACAAATGGTCGGCTATAGCAGCAAGATTACCAGGAAGAACAGACAATGAAATAAAGAACTACTGGAACACTCACATCAGGAAGAGACTGCTTCGAAATGGAATTGATCCTGTTACTCATGCCCCAAGACTCGACCTTCTTGAGATATCCTCCATTCTAAGATCAGTGCTTACCAACCAATCGCTTCTAAATCTGCAAAGTTTATTGGGAGCTCAAGCTTTGATGAACCCAGAACTCTTGAAGCTCGCAACCACTCTGTTAGCTCTCAAGAACAATGAGAACCCAGATTTGGTTTCACAGAATCTACAACAAATTCTGATGCAGGCCGGGAATCATCAAGTAGACAACCAAGTTTCCCCATTGATCAGTCAGATGCCAAGTCAGAGTACCAATATGCATGAAGCTCTCTCAGGCAATATCACAAACATGTGCTGTGCAAGTTCGCTACAGAATTCATCACTTCCTTCATATTTGTGTGATGAAAATCATATTAATCCGCAGCAAAACCAAGTTGATTTGCAAGGAAGAAACCCAACAACATTCGAGCAGAATCTAATGAACAATGAAAATGTCCAAAACATGGGATGTGATTCAGTTCTGTCAACGCCTTTGTCGAGCCCAACCCCATTGAATTCATCGTCTTCGTATGTGAATAGCAGCGCGGAGGAGCAAAGGGATAGACATTGCAGCGACTTATTTAAGTTTGAAATTCCAGAGAGTATCGACATCAATGATTTCTTGTAA	1002	0.4291	MGRAPCCDKNGLNKGPWTPEEDLKLINYIQTHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGKFSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDPVTHAPRLDLLEISSILRSVLTNQSLLNLQSLLGAQALMNPELLKLATTLLALKNNENPDLVSQNLQQILMQAGNHQVDNQVSPLISQMPSQSTNMHEALSGNITNMCCASSLQNSSLPSYLCDENHINPQQNQVDLQGRNPTTFEQNLMNNENVQNMGCDSVLSTPLSSPTPLNSSSSYVNSSAEEQRDRHCSDLFKFEIPESIDINDFL	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele09g0889	333	MobiDBLite	consensus disorder prediction	282	306	-	-
	Lele09g0889	333	FunFam	MYB-related transcription factor	13	66	-	-
	Lele09g0889	333	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Lele09g0889	333	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Lele09g0889	333	SMART	sant	66	114	IPR001005	-
	Lele09g0889	333	SMART	sant	13	63	IPR001005	-
	Lele09g0889	333	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Lele09g0889	333	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	269	-	-
	Lele09g0889	333	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Lele09g0889	333	Coils	Coil	330	333	-	-
	Lele09g0889	333	Gene3D	-	14	66	-	-
	Lele09g0889	333	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Lele09g0889	333	Pfam	Myb-like DNA-binding domain	67	111	IPR001005	-
	Lele09g0889	333	Gene3D	-	69	116	-	-
	Lele09g0889	333	MobiDBLite	consensus disorder prediction	282	309	-	-
	Lele09g0889	333	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Lele09g0889	333	FunFam	Transcription factor MYB39	69	130	-	-
	Lele09g0889	333	CDD	SANT	16	61	IPR001005	-
	Lele09g0889	333	CDD	SANT	69	112	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele09g0889	Lele-ChrLele09	7279182	7280514	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele09g0889	1	333	MYB Transcription Factor Family	AT4G21440	50.413	5.08e-104	307

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele09g0889		Myb_DNA-binding	2.2e-15	CL0123