Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0873 ATGGCCTCCCCTACCCTCATTACCCCAACTTCCACCCCCAAATCACTCCCTCCCACTAAGCCCAAATCCCCCATCATCGCCTCCGGCTCCTCCACCACGACCTCCGCCCAGACCCGCCGTCGTGAATTCCTCTCCATCGCCTCCTCCGTCACCTCCATCTTATACCTCAACCTCAACCCTCTGCTGCCAGCACTAGCTGCTTCAGACGAAGAATATGTGAAGGAAACAGAGGAAGTGATCGGCAAGGTGAGAACCACCATTACAATGGACAAGAACGACCCCAATGTCGCAGACGCGGTGGCTGAGTTGAGAGAGACGTCCAATTCCTGGGTGGCGAAGTACCGGAGAGAGAAAGCTCTATTGGGAAGGGCTTCGTTTCGTGATATGTACTCAGCACTGAATGCAGTTTCAGGGCATTATATTAGTTTTGGACCCACTGCTCCAATTCCTGCAAAACGCAAGGCCAGGATCTTGGAGGAGGTCGACACTGCTGAGAAGGCTCTGCAAAGAGGAAGGTGA 519 0.5395 MASPTLITPTSTPKSLPPTKPKSPIIASGSSTTTSAQTRRREFLSIASSVTSILYLNLNPLLPALAASDEEYVKETEEVIGKVRTTITMDKNDPNVADAVAELRETSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEVDTAEKALQRGR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0873 172 PANTHER PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC 66 168 IPR025585 GO:0009523|GO:0010206|GO:0010207
Lele09g0873 172 Pfam Photosystem II Pbs27 39 168 IPR025585 GO:0009523|GO:0010206|GO:0010207
Lele09g0873 172 Gene3D Photosystem II Pbs27 67 172 IPR038450 -
Lele09g0873 172 FunFam Photosystem II lipoprotein Psb27 67 172 - -
Lele09g0873 172 Hamap Photosystem II lipoprotein Psb27 [psb27]. 48 168 IPR025585 GO:0009523|GO:0010206|GO:0010207
Lele09g0873 172 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0873 Lele-ChrLele09 6994984 6995502 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0873 09 6994984 6995502 Lele29g0531 29 3228743 3232293 CCT
Lele09g0873 09 6994984 6995502 Lele30g0880 30 12713931 12716482 CCT
Lele09g0873 09 6994984 6995502 Lele31g1015 31 17177385 17180375 CCT
Lele09g0873 09 6994984 6995502 Lele32g0508 32 3190214 3192772 CCT
Lele09g0873 09 6994984 6995502 Lele09g0873 09 6994984 6995502 ECH
Lele09g0873 09 6994984 6995502 Lele11g0880 11 8859413 8859931 hybridization
Lele09g0873 09 6994984 6995502 Lele12g0463 12 12546963 12547487 hybridization