Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0857 ATGGCCTTAGATTTGCAGTTAGAGGATTCTGCAGCACAAGCTGATGCTTTTGGGGAAAAATCTTGTTTGGAAAACTGGAATTCTGCTCCTGAAGACATTGCAAATTGTGATGGGGATGCTTCTGGTGACTTTGAATGCAATATCTGCTTGGATTCCTTGCATGATCCTGTATTAACTCTTTGTGGTCATCTCTTTTGCTGGCCCTGCATTTACAAATGGCTCCATTTTAGTAATGTTTCTTCTAAAAAATGCCCAGTATGCAAATCAGAAATCTCTCAATCCTCCCTCATTCCGGTATACGGGCGAATCCAAATCACAACACCTTCTGAAGGCAACGACTCTCACAATGTAGGGACCACCATACCTCCAAGACCTCGCCGTGGTCCCGTGTCAGGTAATGACTCGCAAAGATCATATGATACCGGGGCTGCTTCCCAACCAGCTACTCAATTTCATGCACTCACTGATCCTTATCAGACTCAACAGTTCAATGCATTTGACACAAGACATGGAGTTTTTGGTCAGATAATGTATGCAAGAGTGTTTGGTAACCAGTTGACAAACATGTTGACTTCTAATTCATATGGTGTCGCGGCGAACAATAATCCGAGGATTACAATGGGATGGAGGCGGTTGTCTTTGTCTAGCTATGGCCTATGGTATTGGAGTTCCTTCTCCTTCGCCTCAGCCTATCATTTCATCAATGCCCCTCCCTCTCTTCTCGATCTCACTGCTTCTTCACTTTCACTCTAG 753 0.4422 MALDLQLEDSAAQADAFGEKSCLENWNSAPEDIANCDGDASGDFECNICLDSLHDPVLTLCGHLFCWPCIYKWLHFSNVSSKKCPVCKSEISQSSLIPVYGRIQITTPSEGNDSHNVGTTIPPRPRRGPVSGNDSQRSYDTGAASQPATQFHALTDPYQTQQFNAFDTRHGVFGQIMYARVFGNQLTNMLTSNSYGVAANNNPRITMGWRRLSLSSYGLWYWSSFSFASAYHFINAPPSLLDLTASSLSL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0857 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 105 IPR013083 -
Lele09g0857 250 ProSiteProfiles Zinc finger RING-type profile. 46 88 IPR001841 -
Lele09g0857 250 SMART ring_2 46 87 IPR001841 -
Lele09g0857 250 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Lele09g0857 250 CDD RING-HC_AtRMA_like 44 89 - -
Lele09g0857 250 SUPERFAMILY RING/U-box 39 100 - -
Lele09g0857 250 MobiDBLite consensus disorder prediction 106 142 - -
Lele09g0857 250 Pfam Zinc finger, C3HC4 type (RING finger) 44 93 - -
Lele09g0857 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 193 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0857 Lele-ChrLele09 6868350 6871529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0857 39 189 C3H Transcription Factor Family AT4G28270 39.264 1.33e-33 118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g1017 31 17192777 17201688 Lele09g0857 09 6868350 6871529 CCT
Lele32g0506 32 3164003 3171520 Lele09g0857 09 6868350 6871529 CCT
Lele29g0530 29 3222159 3223013 Lele09g0857 09 6868350 6871529 CCT
Lele09g0857 09 6868350 6871529 Lele09g0857 09 6868350 6871529 ECH
Lele09g0857 09 6868350 6871529 Lele11g0867 11 8697295 8697999 hybridization
Lele09g0857 09 6868350 6871529 Lele12g0475 12 12721620 12723573 hybridization