LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele09g0849	ATGGGTTGCATATTCTCCAAGACTTCAGCTGTGGAAGACAGCCGAGAAGGTTTGACAACGAAATTGCCATCGTTGAGCAAAAGGTCTTCGGAATTGAATGTTTCACGATTGAATTCATCAAAAAGGGATGCGGGAGTTTGGACCAAAAATGTGCTAGATGCCAGAGATGTAAAAGTTTCGTTGATTAGCAAGAAACCCAATGTTTCAGTGAAGTTTTATGATGATCAAATTGGGGAGGAAAAAATTGAGAAACCTGAATTTACTGTTCTTAATCATCCTGGTCATGGTAAAGTAACAAAGGCTACAGAAGGAGAACAAGTTGCGGCAGGATGGCCAGCTTGGCTATCTTCTGTTGCTGGTGAAGCTATCAAGGGATGGATACCTCGGAGTGCTAATACTTTCGAGAGGTTATATAAAATTGGCCAAGGAACATACAGTTCTGTTTACAAGGCACTTGATGTGACTTACCAAAAGACAGTTGCTTTGAAGAAAGTACGCTTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGAGAGATTTTTGTTCTTCGTTGGCTTGACCATCCTAATGTGATAAAGTTAGAGGGCTTGATAACATCCCAGACATCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAACATGATCTTACAGGACTTGCTTCTCATCCTGGCATTAAGTTTTCAGAACCACAGATTAAGTGCTACATGCAGCAGCTTCTCAGCGGATTGGATCATTGTCATAGTCGTGGTGTCCTCCACCGGGACATAAAGGGGTCAAATCTTCTCATTGACAATAATGGCATCTTAAAGATTGCAGATTTTGGTTTGGCAAGCTTTTTTGATCCCCATCACAGTGTTCCATTAACCAGCCGAGTGGTGACTCTTTGGTATAGGCCTCCAGAACTTTTACTTGGAGCATCCCATTATGGTGTTGCAGTGGATTTGTGGAGCGCCGGTTGTATACTGGGGGAACTATATTCTGGCAGGCCTATATTGCCTGGAAAAACAGAGGTTGAGCAATTGCATAGGATATTTAAGCTTTGTGGCTCACCATCTGAAGATTACTGGCTTAAATTGCGGTCGCCACATTCAACAGTATTCAAGCCTCCACACCATTATAGACGTTGTGTTGCTGAAACATTCCAGGAATATCCAGCTGCTTCTGTGAGGCTAATAGAGACCCTACTTTCCATAGATCCTGCACATCGAGGAACTGCAGCTAGTGCTTTAAAAAGTGAGTTCTTTGCCATGGAACCCCTTGCTTGTGATCCTTCAAGTTTACCAAAATATCCTCCCAGCAAAGAGATTGATGCTAAGTTGCGAGATGAAGCAACCAGAAGGCAAAGAGCTGTTGGAGGAAGGGAGCAGAAAGTTGGCGTCGGACTTAGACCAGAAAAAGGACTTCAGGTGCTTGCAGCAAATAACAATGTTGACCCACGCATGTCAATGCAGCAAGGACGTCATTCCAGCTCAAAAAGTCGAAATGAATTGTTCAATCCTCCCAGAGAATCTGCTTCAGGGTTGCTGGTTTTTCCACATAAACATTCAGACAATGTTAAGGAAATGGAAAATAATTTCTCTGGTCATCTGTATAAGGGGCCTTCACATTCAGGTTCATTGGTTCAGGGTCCTGGCTGGGTAAAGGTTGGGAAGGACATGGATGAGCAGCATCTTGGTTCAAACAGAGTCAACCTGTCAAAACTATCAGGCTTAGTTGCATCCAGAACTTCAATGTCTGAAGATCAGGAGCAAAAATCACATTCCTCGAAGTCCAGAAAAACAGTCGATGTACGAAAATCTGTGGAGTCAACTAGTGGATCAGAGTTAAGAAAAAGGCAGGCTCAAAAACACCAGTCTCAACGAATTGATTTGTGTCATGTAGAACATGGAAGAACCCCAACTAAAGAATCAACTCCGGAAGGGTATGGCAGAGGAAACAAGATCTATCTTTCTGGTCCATTGATGGTATCATCAAACAACATGGATGAGATGCTCAAAGAACACGATCGAAAGATTCAGGAATATTCAAGACGTAGAATTGACAAGTCAAGACTTGAAAAAGTTCGTGGGAAGAAAAAGTAG	2091	0.4252	MGCIFSKTSAVEDSREGLTTKLPSLSKRSSELNVSRLNSSKRDAGVWTKNVLDARDVKVSLISKKPNVSVKFYDDQIGEEKIEKPEFTVLNHPGHGKVTKATEGEQVAAGWPAWLSSVAGEAIKGWIPRSANTFERLYKIGQGTYSSVYKALDVTYQKTVALKKVRFDNLDPESVKFMAREIFVLRWLDHPNVIKLEGLITSQTSRSLYLVFEYMEHDLTGLASHPGIKFSEPQIKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPHHSVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSAGCILGELYSGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRSPHSTVFKPPHHYRRCVAETFQEYPAASVRLIETLLSIDPAHRGTAASALKSEFFAMEPLACDPSSLPKYPPSKEIDAKLRDEATRRQRAVGGREQKVGVGLRPEKGLQVLAANNNVDPRMSMQQGRHSSSKSRNELFNPPRESASGLLVFPHKHSDNVKEMENNFSGHLYKGPSHSGSLVQGPGWVKVGKDMDEQHLGSNRVNLSKLSGLVASRTSMSEDQEQKSHSSKSRKTVDVRKSVESTSGSELRKRQAQKHQSQRIDLCHVEHGRTPTKESTPEGYGRGNKIYLSGPLMVSSNNMDEMLKEHDRKIQEYSRRRIDKSRLEKVRGKKK	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele09g0849	696	MobiDBLite	consensus disorder prediction	482	503	-	-
	Lele09g0849	696	MobiDBLite	consensus disorder prediction	578	624	-	-
	Lele09g0849	696	ProSitePatterns	Protein kinases ATP-binding region signature.	140	163	IPR017441	GO:0005524
	Lele09g0849	696	ProSiteProfiles	Protein kinase domain profile.	134	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele09g0849	696	Gene3D	Transferase(Phosphotransferase) domain 1	217	456	-	-
	Lele09g0849	696	MobiDBLite	consensus disorder prediction	482	511	-	-
	Lele09g0849	696	Coils	Coil	661	681	-	-
	Lele09g0849	696	SMART	serkin_6	134	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele09g0849	696	FunFam	probable serine/threonine-protein kinase At1g54610	121	216	-	-
	Lele09g0849	696	MobiDBLite	consensus disorder prediction	583	624	-	-
	Lele09g0849	696	CDD	STKc_CDK9_like	134	418	-	-
	Lele09g0849	696	PANTHER	CELL DIVISION PROTEIN KINASE	132	424	-	-
	Lele09g0849	696	SUPERFAMILY	Protein kinase-like (PK-like)	128	420	IPR011009	-
	Lele09g0849	696	FunFam	probable serine/threonine-protein kinase At1g54610	217	458	-	-
	Lele09g0849	696	Pfam	Protein kinase domain	135	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele09g0849	696	MobiDBLite	consensus disorder prediction	528	550	-	-
	Lele09g0849	696	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	254	266	IPR008271	GO:0004672\|GO:0006468
	Lele09g0849	696	Gene3D	Phosphorylase Kinase; domain 1	121	216	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele09g0849	Lele-ChrLele09	6808986	6814797	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele09g0849	126	459	Core Cell Cycle Gene Families	AT5G10270	49.143	6.14e-109	338

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Lele09g0849		Pkinase	5.8e-65	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele09g0849	09	6808986	6814797	Lele11g0858	11	8607664	8613386	hybridization
	Lele09g0849	09	6808986	6814797	Lele12g0484	12	12821863	12826793	hybridization