Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0845 ATGGGTCTTGGGAAGACCATTCAAACAATAGCATTTCTTGCTGTTGTGTTCGGTAAAGATGGAGAATATATGCCAAAGGAAAACCAAGCAATGAAAAGAGATCCTGTATTAATAATTTCCCCAACTTCTGTTACTCCCAACTGGGAGAGTGAATTCTCTAAATGGGCAAACTTTAGTGTTTCCATTTATCATGGTTCAAACCGAGATCTAATATATGATAAATTGGAAGCACATGCAGTGGAGATACTTATTACCAATTTTGACACATACAGGATTCATGGTAGCATCTTGTCAGAAATCAAATGGGACATTGTGGTTATTGATGAGGCTCATCGTCTTAAGAATGAGAAATCCAAACTCTACAGAGCATTTGTGGAAGCCCACTCACGCAAGTTGAATATTGCAAGAGGATTGTATCAAATGGAATCATTTGACCTTACCTTCACAGACCTGATGGTTGTGATTCATGTCCCTTTTGCCTTGTCCTTCCTTGCCTTGTCAAGCTCCAACAGGTTGAGTAAGATCTTAGAACATTTCTTCACCTCTCTTTTGGTTATAGCATCTGCATACCTGCAAATTGTATATCTCTGGGCATCTACCGTGACTTACTCTATAAGCAATCACCTTGAGCTGATCAAGCCAAACCCCAGAGATGACCCGGACAAACAAAGAAAAGATGCAGGCTTGCTGCTTGTAAATCGTGTGGTGACATTTGATCCCAACTGGAATCCCGCTCAAGACTTACAGGCACAGGACCGGTCATTCCGATTTGGGCAGAAGCGACATGTTGTCATATTCCGGCTTCTTGCAGCTGGTTCACTTGAAGAGCTTGTTTATTCTCGTCAGATCTACAAGCAGCAACTATCAAATATTGCTGTCTCTGGAAAAATGGAAAAGCGTTATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGGGAACTTTTGGGAATTTGCAACTTATTTCGAGATTTATCTGACAAGCTTTTTACAAGTGAAATAATTCATGTGCATGATAAGGAAGGAAAAGAAAATGGATGTAGAATAGAACGCGGAGAAAAACTTGTTCCTTCAGAAGAAGCTGATATATTAGTGTCAGAGTCTGGGAACCGGTTATCAACCAGATATAAGAGGACTTCAACGAGGGAAGTAAATCTGGAAGATCTTGGGATGCTTCATATGCCCTAG 1188 0.4066 MGLGKTIQTIAFLAVVFGKDGEYMPKENQAMKRDPVLIISPTSVTPNWESEFSKWANFSVSIYHGSNRDLIYDKLEAHAVEILITNFDTYRIHGSILSEIKWDIVVIDEAHRLKNEKSKLYRAFVEAHSRKLNIARGLYQMESFDLTFTDLMVVIHVPFALSFLALSSSNRLSKILEHFFTSLLVIASAYLQIVYLWASTVTYSISNHLELIKPNPRDDPDKQRKDAGLLLVNRVVTFDPNWNPAQDLQAQDRSFRFGQKRHVVIFRLLAAGSLEELVYSRQIYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELLGICNLFRDLSDKLFTSEIIHVHDKEGKENGCRIERGEKLVPSEEADILVSESGNRLSTRYKRTSTREVNLEDLGMLHMP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0845 395 Gene3D - 1 135 IPR038718 -
Lele09g0845 395 Gene3D - 291 300 - -
Lele09g0845 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 127 IPR027417 -
Lele09g0845 395 SMART ultradead3 1 194 IPR014001 -
Lele09g0845 395 CDD SF2_C_SNF 233 269 - -
Lele09g0845 395 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 188 IPR014001 -
Lele09g0845 395 Pfam SNF2-related domain 1 126 IPR000330 GO:0005524|GO:0140658
Lele09g0845 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 313 IPR027417 -
Lele09g0845 395 PANTHER SNF2/RAD54 FAMILY MEMBER 233 341 - -
Lele09g0845 395 Gene3D - 232 290 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0845 Lele-ChrLele09 6704639 6708385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0845 229 299 RAD5 or RAD16-like Gene Family AT5G05130 43.662 7.55e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele09g0845 SNF2_N 5e-24 CL0023