LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele09g0841	ATGACGAAGATAGATAATTTCCTGATTTCCAGGGTCAACGAAGATGCTCAGGATCCTATCTTACCTTACCTCCGGTCTATTAGGGAAGCTCTTGAAGATTCCATCTCTGGACGAACTTCCAATTTGGGTGTCGTAACACTTCTACAAGATTGCATCAGAAAGTTCAAGCACGATGTCCAGTACAGAAATGACATCAGATTTCTTAAGATTTGGCTCCTATATATGGATGCTAGTAAGGATTTTAATAATGTGTTCAAAGAAATGCTGGATAGTAATGTATGTGCCAACCAGTCTTCACTTTATGTATGGTCTGCATATTTTTTTGAATCCAAAGGGAGATTGCATGACGCTCACACGGCTTATCAGCTTGGCATCTCCAGAAATGCAGAGCCAATTGAGTGGCTGAAGAAAGCGCATAAATTGTTCCTCAATAGAATTTCTGAAATAGCAACTGTTGCTCCACGTCAGCAGATTGATGATAACAAATCCATGATAGTTGGAAATGGCCCCATTAATCCATGGAGCAACTCCATCATGGATGATCTATTGAAGAGGACAAATTCTTTGATCACAAAATTTGATGGGTATCATTCAAATAACAAAGCTTACGCTGGAAAAGTTGCCTTGTCTTCGTTGAAGAATTCGTCAAGGAATAAAATTGTAGAGATAGGTGGAAAGAAGTATCAAATCAAGGGTTGTGCCGGACAAGGTGGTTTCGCTCAAGTATACAAGGCATATGTTAATAGTAATCCCGATGAAGTTGTCGCTCTGAAGATCCAAAAACCAGCATTCCCTTGGGAATTTTACATCTATCGTCTGCTTGATCAACGTATCTTAGAGAGTGAAAGACCAAGCTATGGCTTTGTTCATAGAATTCATATCTATTCTGACTGTAGCATACTCATCTGTGACTATTTAGCTCATGGGACATTACAGGATGTCGTAAATTCATATTTGTTCCTGGGGAAATCCATGGAAGAAGTGCTGTGCATTTACTACACTATAGAAATGCTACATATGCTTGAGACATTGCATGATGTTGGCATAATTCATGGCGATTTCAAGCCAGATAACCTGCTTATTCGCTATGCTAGTGGTGACCTTAAAGAAGACGAGTTTTTGAACAGAAGTGGTCCTTGGCGTGATCAGGGTCTTTGCCTTGTAGACTGGGGAAGAGGAATTGATCTGCGTCTCTTTCCGGATCACACAGTATTTAATGGAGACTGCAGAACTTCTGGGTTTCGTTGCATTGAGATGCAAGAGAAAAGAACATGGAGATTTCAGGTAGACGCATATGGCCTTTGTGCTGTTGTCCACTTGATGTTGCATAATACTTATATGGAGATTGTCAAAAACGAATCATCCGATGGGAGCTACGTTTATCTACCCAGACTGCCATTTAAACGTTACTGGAACGTTGAGCTGTGGAAGACTTTCTTTACCAAGATGTTAAACCAATACCCTGGCAATGATGATAGAAGGTTGCTGCAGGAGTTGAGAAAGTCCTTCGAGGACTATATGGGCTCCAATCCACAGCTTATAAAGAAGCTAAAGGAGTTACTCGTGAAGCAAAGGGCTTCCTTGTGCTCTGCTTAG	1596	0.4079	MTKIDNFLISRVNEDAQDPILPYLRSIREALEDSISGRTSNLGVVTLLQDCIRKFKHDVQYRNDIRFLKIWLLYMDASKDFNNVFKEMLDSNVCANQSSLYVWSAYFFESKGRLHDAHTAYQLGISRNAEPIEWLKKAHKLFLNRISEIATVAPRQQIDDNKSMIVGNGPINPWSNSIMDDLLKRTNSLITKFDGYHSNNKAYAGKVALSSLKNSSRNKIVEIGGKKYQIKGCAGQGGFAQVYKAYVNSNPDEVVALKIQKPAFPWEFYIYRLLDQRILESERPSYGFVHRIHIYSDCSILICDYLAHGTLQDVVNSYLFLGKSMEEVLCIYYTIEMLHMLETLHDVGIIHGDFKPDNLLIRYASGDLKEDEFLNRSGPWRDQGLCLVDWGRGIDLRLFPDHTVFNGDCRTSGFRCIEMQEKRTWRFQVDAYGLCAVVHLMLHNTYMEIVKNESSDGSYVYLPRLPFKRYWNVELWKTFFTKMLNQYPGNDDRRLLQELRKSFEDYMGSNPQLIKKLKELLVKQRASLCSA	531

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele09g0841	531	ProSiteProfiles	BUB1 N-terminal domain profile.	7	163	IPR013212	-
	Lele09g0841	531	FunFam	Mitotic checkpoint serine/threonine-protein kinase BUB1	226	528	-	-
	Lele09g0841	531	Pfam	Protein kinase domain	230	445	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele09g0841	531	Pfam	Mad3/BUB1 homology region 1	12	125	IPR013212	-
	Lele09g0841	531	SMART	serkin_6	228	507	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele09g0841	531	PANTHER	MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1	167	525	IPR015661	GO:0007094
	Lele09g0841	531	Gene3D	-	9	162	-	-
	Lele09g0841	531	SMART	mad3_bub1_i	1	125	IPR013212	-
	Lele09g0841	531	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	349	361	IPR008271	GO:0004672\|GO:0006468
	Lele09g0841	531	ProSiteProfiles	Protein kinase domain profile.	228	531	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele09g0841	531	Gene3D	Transferase(Phosphotransferase) domain 1	225	529	-	-
	Lele09g0841	531	SUPERFAMILY	Protein kinase-like (PK-like)	225	506	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele09g0841	Lele-ChrLele09	6670812	6675598	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele09g0841	226	373	CBL-interacting serine-threonine protein kinases	AT5G45820	29.747	4.71e-07	50.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	BUB	Lele09g0841		Pkinase	3.4e-12	CL0016