Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0839 ATGAGCAGCGTCTGCGCTGATCAACACAAGTTCCTTCCCTTCTCCCCCAAGAAATCCCTCCTTGATATCCCTCCCCGGAAGCTCCTAACTCGCCGTGCCGCCGCAGCCGCCGCCATTCACGACGAGGCTTTCCTTCACAAGTTTCTCCCTCGTAACAACCTCAACGCCGACTCAGATGAAGATGACTATGATCCCTATTCATCTGACAATTTCCGCATGTACGAGTTCAAGGTCCGCCGCTGCAGTCGCAGCCGCAGCCACGACTGGACCGACTGTCCGTTCGCTCACCCTGGTGAGAAGGCTCGCCGTCGTGACCCCCGGCGGTTTCACTACTCCGGTACTGTATGTCCCGAGTATCGTCGCGGCGGGTGCAGCCGCGGTGATAGCTGCGAGTTTGCGCACGGCGTGTTCGAGTGTTGGCTTCATCCTGCAAGGTACAGAACTGAGGCTTGTAAAGATGGGAAGAATTGTAAGCGAAAGGTTTGTTTCTTCGCTCATACACCTCGCCAGCTGAGAATTTTGCCTGTTAATTCTCAGTCCCATAATTCTTCTTCATCGGCCGACTACCATGTTTCCTGCAAGAATCATAACAAATTCTTGAACCCTACCTCTGGATCCAACAATTGCTGCTTGTTCTGTCATCATTGCGCCGCTGCTGGTTCCACTTCGTCTCCAACATCCACGCTGTTTGGGATGTCCCATATGTCGCCGCCACTCTCGCCGTCGTCGTCCCCTGTTTCACAGCCTCTTTCGCCGGTGAAACGCCGATCGACTGCGAATGGAGTGTCGCCAATCTCTCGATATTGTGACAGACTTGCAGGATGCGAGACATCATCTAGCAGGTTGATGAATAATCATGGACTTGCGAGCTATAAAGATGATCTCACTGAATTAATGAACTCCTTGGAGGGTATGAATTTCATTGAAGCCAATGCTTCGCCTGTTTCTGCAACAAAAGCCCCAAATCTTCCGTGGCTTGATATGTCTCTGATTACCTGTGAAGACCAGCAGAACCAGTTCATTCTTTCACCGGCAACTTCTTTTAGCTGTGAAGATCAGCAACAACAACAGTTCATTCTTTCGCCTTCCGCTCATAATACTCCAACATCATCATCTTCTGTTTCTTCATCAAGCTTCTCCAATGGGAAATTATATACAAACAGCGCATTTCTCAGCAGTAGTGAGAGCAAGGTCATTCCAAACGATAACGGGTCGTCCTGCTCCGCCCCAGATCTCGGATGGGTCAACGAGCTGCTGATGTAG 1263 0.5075 MSSVCADQHKFLPFSPKKSLLDIPPRKLLTRRAAAAAAIHDEAFLHKFLPRNNLNADSDEDDYDPYSSDNFRMYEFKVRRCSRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGGCSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNSQSHNSSSSADYHVSCKNHNKFLNPTSGSNNCCLFCHHCAAAGSTSSPTSTLFGMSHMSPPLSPSSSPVSQPLSPVKRRSTANGVSPISRYCDRLAGCETSSSRLMNNHGLASYKDDLTELMNSLEGMNFIEANASPVSATKAPNLPWLDMSLITCEDQQNQFILSPATSFSCEDQQQQQFILSPSAHNTPTSSSSVSSSSFSNGKLYTNSAFLSSSESKVIPNDNGSSCSAPDLGWVNELLM 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0839 420 Gene3D - 111 174 - -
Lele09g0839 420 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 115 135 IPR000571 GO:0046872
Lele09g0839 420 FunFam Zinc finger CCCH domain-containing protein 66 68 136 - -
Lele09g0839 420 MobiDBLite consensus disorder prediction 234 259 - -
Lele09g0839 420 ProSiteProfiles Zinc finger C3H1-type profile. 111 137 IPR000571 GO:0046872
Lele09g0839 420 SMART c3hfinal6 145 168 IPR000571 GO:0046872
Lele09g0839 420 SMART c3hfinal6 110 136 IPR000571 GO:0046872
Lele09g0839 420 PANTHER UNKEMPT FAMILY MEMBER 34 419 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0839 Lele-ChrLele09 6652480 6653742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0839 66 172 C2H2 Transcription Factor Family AT5G07500 70.093 1.01e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele09g0839 zf-CCCH 1.2e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0839 09 6652480 6653742 Lele09g0839 09 6652480 6653742 ECH
Lele09g0839 09 6652480 6653742 Lele11g0846 11 8480764 8482217 hybridization
Lele09g0839 09 6652480 6653742 Lele12g0499 12 13137863 13139182 hybridization