Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0828 ATGACTCAGTGCAATGGCTCTGAAAATAATATCATCGTCGACAAACGGAAAGATAGATTCATTACCACAACATGCCCTTCCTGTGGACATCATATCAAATCCCACGAACAGGCTGGGATCCATGACTTGCCCGGGCTGCCGGCCGGAGTGAAGTTTGATCCGACAGATCAAGAGATTCTTGAACATTTGGAAGCAAAAGTTCGATATGATATTCATAAGCTTCATCCATTGATTGATGAGTTTATACCTACTCTTGAAGGCGAGAATGGAATCTGCTATACTCATCCTGAGAAACTTCCGGGAGTAAGCAAAGATGGTCTGGTGCGCCATTTCTTTCACAGGCCATCGAAAGCATACACGACAGGAACAAGGAAAAGGAGGAAGGTACACACTGAGGACGTGGACGGTAGCGAGACACGTTGGCACAAGACAGGCAAAACGAGGCCAGTGTCTCTGAGTGGGAAGCTAATAGGTTACAAGAAGATTCTGGTGCTTTACACAAACTATGGGAAACAAAGAAAACCAGAGAAGACGAACTGGGTAATGCACCAGTACCACCTTGGATATAACGAAGAGGAGAAAGAAGGAGAATTAGTGGTTTCCAAGGTTTTCTATCAAACACAACCTCGGCAATGTGGTTCCTTGCTCATGAAAGATCAGTCAATGAATCCTGCAAAACTCAAAGCTCATCATCAGGCCATGTACGAGGCTGCAGCTGCAAACAATCATAAGAACAATAATAATAATGGGTTTGTTCATGAGTTCTATGGTTCTTCATTCTTGTCGTTCGATCAAGGAAACAACCACAACAGGTCTAGTAATTCTCAAGTGATCTCCCATTTTCCTGTTCAGGATGGTTCTTCTTTCAATATTCCTTGA 879 0.4346 MTQCNGSENNIIVDKRKDRFITTTCPSCGHHIKSHEQAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRYDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLVRHFFHRPSKAYTTGTRKRRKVHTEDVDGSETRWHKTGKTRPVSLSGKLIGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGYNEEEKEGELVVSKVFYQTQPRQCGSLLMKDQSMNPAKLKAHHQAMYEAAAANNHKNNNNNGFVHEFYGSSFLSFDQGNNHNRSSNSQVISHFPVQDGSSFNIP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0828 292 Pfam No apical meristem (NAM) protein 47 187 IPR003441 GO:0003677|GO:0006355
Lele09g0828 292 Gene3D NAC domain 55 210 IPR036093 GO:0003677|GO:0006355
Lele09g0828 292 SUPERFAMILY NAC domain 40 206 IPR036093 GO:0003677|GO:0006355
Lele09g0828 292 ProSiteProfiles NAC domain profile. 46 206 IPR003441 GO:0003677|GO:0006355
Lele09g0828 292 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 21 264 IPR044799 GO:0003700
Lele09g0828 292 FunFam NAC domain-containing protein 73 55 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0828 Lele-ChrLele09 6577546 6579284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0828 24 213 NAC Transcription Factor Family AT4G28500 85.789 4.18e-121 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele09g0828 NAM 1.8e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0828 09 6577546 6579284 Lele09g0828 09 6577546 6579284 ECH
Lele09g0828 09 6577546 6579284 Lele11g0835 11 8398452 8400234 hybridization
Lele09g0828 09 6577546 6579284 Lele12g0517 12 13438241 13440029 hybridization