Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0827 ATGCTTCTGCAACAAAAGATGGATGATGCAGAAATTTCAAGTGGTTTTCCTCGTCATCATCAGAACCCAGAATCTAGTAACAACAACAATAATCCTCCTGTTTTGAAGAGGAAGAGAAACCTCCCAGGAAATCCAGATCCTGAAGCAGAGGTTATAGCTTTATCACCCAAGACTCTGATGGCGACAAACAGATTCTTGTGTGAAATCTGTGGGAAGGGATTTCAAAGGGATCAGAATCTGCAGCTGCATAGAAGAGGACACAATCTTCCGTGGAAGCTGAAGCAGAGAACAAGCAAAGAACCAAGGAAGAGAGTGTATGTGTGCCCAGAGAAGACATGTGCCCACCATGATCCTTCAAGGGCTCTGGGAGACTTAACAGGAGTAAAGAAGCACTTTTGCAGAAAGCATGGAGAGAAGAAGTGGAAGTGTGACAAGTGCTCAAAGAGATATGCTGTCCAATCTGACTGGAAAGCTCACTCTAAGACCTGTGGTACCAGAGAATACAAATGTGATTGTGGCACTATCTTTTCACGGAGAGACAGTTTCATAACTCACAGGGCATTCTGCGATGCGTTAGCAGAAGAGACAGCAAGAGTGAATGCAGAATCTACAGTGAACAACTCCTTACTGGGTTACAACATCGTCATGGGAAATTCCCAACAAGGGCCTGCTGCTGCTGCCGCTGGCATAAGCATGATGACTACAACACATTTTCCTTCGATTTTCAAGCAAATTTCAAACACTACTGCTACTTCTGAAACAAATCATCAAACACCTAATGGGCTATCTCTATGGATGGGTCCAACTCATAATGAAACAATGGCCAATAATTTGAACTGTAATAACAACAATAACATGTTCGAGATTCATCATCAACTTGGATCAGTCGTCACGAGCTCATCATCATCAGGATCAATAGTATTCGGCAATAACAACACGCTTGTTTCATGCTCAAATCCTCAGCTGAATTGGGTGTTTGGAAGTAATAATAATATGAATGGTGGTCATCACCATCATCATCAAGATCAGCTGATCAGTGTTCCTTCCTTGTACAGCTCCCAACATCAGCAATCCCATCAAACATTCTCGGCGAACATGTCGGCGACAGCTTTGTTGCAGAAAGCTGCTCAAATCGGGGCAACTTCAACCGACACGTCATTCCTGGGAAGCTTAGAGTTGAAATGCAGCAACAGTACTCAAGAACAAGAAGGGAACAAATTTTGCGGGATGTATGGTTCAGGTTCAGTACTGGTATCTAGCATGGGAAGCGAGACGACAGAGAACCCAGCAAAACGGAGGAAGATAGGGCAGAAAGAAGAGAATAATGGAGGAGGAGAGCAAACTAGGGATTTTCTGGGTGTGGGAGTAGAATCCATTTGCCATGCTGCTCCAATCAACGGATGGAATTGA 1410 0.439 MLLQQKMDDAEISSGFPRHHQNPESSNNNNNPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEPRKRVYVCPEKTCAHHDPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAESTVNNSLLGYNIVMGNSQQGPAAAAAGISMMTTTHFPSIFKQISNTTATSETNHQTPNGLSLWMGPTHNETMANNLNCNNNNNMFEIHHQLGSVVTSSSSSGSIVFGNNNTLVSCSNPQLNWVFGSNNNMNGGHHHHHQDQLISVPSLYSSQHQQSHQTFSANMSATALLQKAAQIGATSTDTSFLGSLELKCSNSTQEQEGNKFCGMYGSGSVLVSSMGSETTENPAKRRKIGQKEENNGGGEQTRDFLGVGVESICHAAPINGWN 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0827 469 MobiDBLite consensus disorder prediction 420 450 - -
Lele09g0827 469 Gene3D Classic Zinc Finger 98 189 - -
Lele09g0827 469 MobiDBLite consensus disorder prediction 13 49 - -
Lele09g0827 469 SMART c2h2final6 65 87 IPR013087 -
Lele09g0827 469 SMART c2h2final6 141 161 IPR013087 -
Lele09g0827 469 SMART c2h2final6 106 136 IPR013087 -
Lele09g0827 469 MobiDBLite consensus disorder prediction 18 35 - -
Lele09g0827 469 MobiDBLite consensus disorder prediction 427 445 - -
Lele09g0827 469 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Lele09g0827 469 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 454 IPR031140 -
Lele09g0827 469 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
Lele09g0827 469 FunFam protein indeterminate-domain 12-like 44 112 - -
Lele09g0827 469 FunFam protein indeterminate-domain 5, chloroplastic-like 119 198 - -
Lele09g0827 469 Gene3D Classic Zinc Finger 61 88 - -
Lele09g0827 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0827 Lele-ChrLele09 6568340 6570841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0827 31 468 IDZ Gene Family AT1G03840 50.202 5.08e-143 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele09g0827 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0827 09 6568340 6570841 Lele09g0827 09 6568340 6570841 ECH
Lele09g0827 09 6568340 6570841 Lele11g0834 11 8387396 8392279 hybridization
Lele09g0827 09 6568340 6570841 Lele12g0518 12 13445739 13450286 hybridization