Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0800 ATGTTGCAATCTGGAAAGTCTGTGCGAGAACTGGGCTGTGACTCTCTTGCGACTCGATTCGGTGATTCGCTGACTTGTGAACAGAACAAGCCCGATTTCAAAGAACTCGATCTTGATTCGTTCGTTTCGCCATTGAAAATCCGCAGCGCTGGTAATGCTGGCTGCGGCAGTGGAGCTGCTGCCACTTCGAGCTCGAGCTCGAGCTCCTCCGGCTCTGTCACAGGTAGAAGCAACGTTCCCAAGATTCCCAGAAGACCCGACGGAAAACCAAACCACCATTCCGGCGAGCTCACTGGCTATTTCGATACCAGCCCGAATGCCTCAGAGAGCCTCCGATCCGCCAATTCCAAGCCGGGTCATCGGAGATCGGTTTCGGCTGGAGCCCCGTTAATCTACTCCGGCGGCAGTCATAGCAGCCCGGGGAGTAATAATTGCTCGAATAGTGCAACTTCAGGTACCAATTTATTCCCAACGGGTAATATTTGTCCTTCGAGGAAGATCCTTAAATCGGTTATGGTGTCTCGAGCTTCCAATAGAACTGATGTGTTGGGTTCTGGAACGGCTAACTATGGCCATGGTAATATAATGCGTGCTGGCGCGAAATTGAGCAATTCTGGGCACGTCGTGGATGACAATGGGGCTGGGAATCCTCAGCTTGGTGGAGCGTCGGGGTCCGTTAGACGAGCAATGAGTGGTTCTGATCCGGAAGAGATGAAGAAGACTGGGAATGAGTTATATAGAAGCGGTGATTTTGTGGAGGCATTGTCATTGTACGATCGTGCTATTTCGATATCGCCAAATAATGTAGCCTACCGGAGTAACCGGGCAGCGGCATTGACGGCGTTGGGGAGATTGGCTGAGGCAGCGAAGGAGTGTGAAGAGGCTGTGAAGTTGGACCCTAATTATGCTCGGGCACATCAGAGGCTGGCCTCTCTTTGCCTGCGCTTTGGAAGTGTCGGACACGCCAAGCGCCACCTCTATCTCCCTGGGCAACACGTGGATCAATCTGAACTGCAGAAGCTGAGGTTATTGGAGAAACATATAAACCAATGTGCAGCGGCAAGGAAGATTGGCGATTGGAAGATTGCACTTGGGGAATCGAATGCAGCCATTGCAGTTGGGGCAGATTTCTCACCTGAGCTTGTTGCTTGTAAAGTGGAAGCTTACTTAAAACTCCATCAACTTGAGGATGCTGAATCCAGTCTCTCAAACATTCCAAAGTTGGAAGGTTGTCCTTTATCCTGCTCTCAAACCAAGTTCTTTGGTATGGTTGGTGAAGCCTATGTGCACTTGGTTCATGCTCAGGTTCAGATGGCCATGGGAAGATTTGAGAATGCAGTAGCATCAGCTGAAAAGGCTAAACTGTTAGATTACAGCAATGTAGAAGTTGAGAGGGTTCTAAATACTGTGAAAATGGTAGCAAGAGCTCGCTCAAAGGGCAATGATCTCTTTAGCTCCGACAAATTTTTTGAAGCTTGTTCTGCTTATGGGGAAGGCCTCAAATATGACAGCTACAACTATGTTCTGTATTGTAATAGAGCTGTTTGTTGGTCTAAACTTGGACTATGGGAAAAATCTGTTGAGGATTGTAACCAAGCTCTCAACATTCAACCAAATTACACCAAGGCCCTCTTTCGCAGGGCTGCATCAAATGCAAAGCTTGAAAGATGGGCTGAAGTTGTGAAAGATTTTGAGACCTTAAAACAAGAACTCCCAGGAGACACTGGAGTTGTTGAATCCCTTCGTAAGGCTCAGCTAGCTTTAATAAAATCTCGTGGAGAGGACCATGCTGGAAAGCTTGAAGCTGAAGTTGGAGCTGTCTCTTCGTTGGAAGAATTTAAAGCTGCTATTGCTTCTGCTTGCATCTCAGTAGTTCATTTCAAAGAGGCATCGGATGAACTATGCGGAGAAATATCCCCATTCATAAATATGTTGTGCATCAGATACCCATCTGTTAAATTTATCAAGGTTGATATGGAGGAGTGTTTAGCCATAGCAAGAGCCGAGAGCATAAGAACTGTCCCAACGTTCAAAATTTATAAAAATGGAACGAAGGTGAAGGAGATGATTCGGCCAACGCACAAGTTCTTAGAAGAGTCAGTAAGAAGCTGTAGTTCCCTATGA 2124 0.4713 MLQSGKSVRELGCDSLATRFGDSLTCEQNKPDFKELDLDSFVSPLKIRSAGNAGCGSGAAATSSSSSSSSGSVTGRSNVPKIPRRPDGKPNHHSGELTGYFDTSPNASESLRSANSKPGHRRSVSAGAPLIYSGGSHSSPGSNNCSNSATSGTNLFPTGNICPSRKILKSVMVSRASNRTDVLGSGTANYGHGNIMRAGAKLSNSGHVVDDNGAGNPQLGGASGSVRRAMSGSDPEEMKKTGNELYRSGDFVEALSLYDRAISISPNNVAYRSNRAAALTALGRLAEAAKECEEAVKLDPNYARAHQRLASLCLRFGSVGHAKRHLYLPGQHVDQSELQKLRLLEKHINQCAAARKIGDWKIALGESNAAIAVGADFSPELVACKVEAYLKLHQLEDAESSLSNIPKLEGCPLSCSQTKFFGMVGEAYVHLVHAQVQMAMGRFENAVASAEKAKLLDYSNVEVERVLNTVKMVARARSKGNDLFSSDKFFEACSAYGEGLKYDSYNYVLYCNRAVCWSKLGLWEKSVEDCNQALNIQPNYTKALFRRAASNAKLERWAEVVKDFETLKQELPGDTGVVESLRKAQLALIKSRGEDHAGKLEAEVGAVSSLEEFKAAIASACISVVHFKEASDELCGEISPFINMLCIRYPSVKFIKVDMEECLAIARAESIRTVPTFKIYKNGTKVKEMIRPTHKFLEESVRSCSSL 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0800 707 SUPERFAMILY TPR-like 472 585 IPR011990 GO:0005515
Lele09g0800 707 MobiDBLite consensus disorder prediction 56 77 - -
Lele09g0800 707 MobiDBLite consensus disorder prediction 52 147 - -
Lele09g0800 707 SUPERFAMILY Thioredoxin-like 607 692 IPR036249 -
Lele09g0800 707 Pfam Thioredoxin 610 692 IPR013766 -
Lele09g0800 707 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 702 IPR044534 -
Lele09g0800 707 CDD TRX_family 611 692 - -
Lele09g0800 707 FunFam TPR repeat-containing thioredoxin TTL4 599 705 - -
Lele09g0800 707 SUPERFAMILY TPR-like 344 468 IPR011990 GO:0005515
Lele09g0800 707 Gene3D Tetratricopeptide repeat domain 233 592 IPR011990 GO:0005515
Lele09g0800 707 Gene3D Glutaredoxin 593 704 - -
Lele09g0800 707 SUPERFAMILY TPR-like 236 325 IPR011990 GO:0005515
Lele09g0800 707 SMART tpr_5 507 540 IPR019734 GO:0005515
Lele09g0800 707 SMART tpr_5 269 302 IPR019734 GO:0005515
Lele09g0800 707 SMART tpr_5 427 460 IPR019734 GO:0005515
Lele09g0800 707 SMART tpr_5 235 268 IPR019734 GO:0005515
Lele09g0800 707 SMART tpr_5 541 574 IPR019734 GO:0005515
Lele09g0800 707 MobiDBLite consensus disorder prediction 211 240 - -
Lele09g0800 707 MobiDBLite consensus disorder prediction 97 120 - -
Lele09g0800 707 ProSiteProfiles TPR repeat profile. 235 268 IPR019734 GO:0005515
Lele09g0800 707 Pfam Tetratricopeptide repeat 245 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0800 Lele-ChrLele09 6339803 6342862 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0774 29 5013879 5018055 Lele09g0800 09 6339803 6342862 CCT
Lele30g0629 30 10979880 10984089 Lele09g0800 09 6339803 6342862 CCT
Lele09g0800 09 6339803 6342862 Lele09g0800 09 6339803 6342862 ECH
Lele09g0800 09 6339803 6342862 Lele11g0805 11 8141118 8144201 hybridization
Lele09g0800 09 6339803 6342862 Lele12g0538 12 13693326 13696191 hybridization