Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0788 ATGCCTGGAGTTGGGCATACTAGTCAAGATTGGGAGCCGGTGGTGATCCGGAAGAAAGCTCCGACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAATGCAGCTCGCCGCGCTGGTGCCGAGGTCGAGACGGTTAAGAAATATGAACGTGTGCCAACTGAACTCAAGAAAGCTATTATGCAAGCTCGGATGGATAAGAAACTTCCCCAGTCACAGCTTGCTCAGTTAGATATTTTATATGACTGTGGTAACTGCTTACAGATGATCAATGAGAAACCTCAAGTGATTCAGGAGTACGAATCAGGAAAAGCCATTCCAAACCAACAGATAATTAGCAAGCTGGAGAGGGCCCTTGGGGCCAAACTGCGCGGCAAGAAATAG 381 0.4961 MPGVGHTSQDWEPVVIRKKAPTAAAKKDEKAVNAARRAGAEVETVKKYERVPTELKKAIMQARMDKKLPQSQLAQLDILYDCGNCLQMINEKPQVIQEYESGKAIPNQQIISKLERALGAKLRGKK 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0788 126 SUPERFAMILY lambda repressor-like DNA-binding domains 53 122 IPR010982 GO:0003677
Lele09g0788 126 CDD HTH_XRE 57 119 IPR001387 -
Lele09g0788 126 ProSiteProfiles Cro/C1-type HTH domain profile. 88 125 IPR001387 -
Lele09g0788 126 Gene3D - 42 126 IPR010982 GO:0003677
Lele09g0788 126 Pfam Multiprotein bridging factor 1 9 49 IPR013729 -
Lele09g0788 126 Pfam Helix-turn-helix 88 121 IPR001387 -
Lele09g0788 126 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 49 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0788 Lele-ChrLele09 6213381 6214806 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Lele09g0788 MBF1 7.9e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0788 09 6213381 6214806 Lele09g0788 09 6213381 6214806 ECH
Lele09g0788 09 6213381 6214806 Lele11g0790 11 8005798 8008140 hybridization