Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0678 ATGAGGTCCAAATCGAGGCGTCGCCGGCGAAGCTTTGTCTGGCCATCGATTTCTCCGGCCAATGCTGAACCTACCCACTTCCTGAAGATCATACTTCCGGGAACCATTCATGCCCATAACATGAGCATTCCAAAGGAGTTCGTAAGAAGATTTGAGAATGAACTGTTTACTAGTGAGGCAACGATTGGTGTTCCAGATGGTCTTGTTTGGAAGATGGACCTGAAGAAGAAATCTGAAAACGAAGCTTGGTTTTGCAAGGGTTGGGAGGAATTTGTGCAGTACTATTCTATTAGCTTTGGCTTCTTTTTAGTGTTTAAATATGAAGGCAATTCAAAATTCAGTGTGGTGATCTTTGATTCGAGTGTATCTGAGATTCACTATCCATGCAAAGATGATAACCCTGAGAATCAGCAGAACTCAGTATCTGATCAATCTGGGTACAACACAAGAAGGAGCCAAAGGCATAAGCTGGAAGATGAAGAAGAAATAATCGACATAGAAGATGAGAATAATGCATTAAGCCATGGTAAATCAGGAAAGAAAGACAGATCTGGGAAAGAAATTGATAATTCAATAAAGCATGAGAAAGAGAAAGAAAGATCTGGGCAAGTGCAAAGAAGCGGTAGTTTCAAAATGAAGACGAGAACTTCGAGTAGAAAGCAAAGAGCTTTGGAAGCTGCCCAGAATTTCGAACCAGCGAATCCCCACTTTACTGCAATCATAAGGCCAGCTAATCTGAATCGTTGCTACTTGGATGTGCCTGCTGAATTTCGGAGGGCGAATATGGGGATAATGGGTGCTATGAAGCTGGAGGATTGTAGTGGAGGAAAATGGGAGGTGAATTATGGGAAACACGTGTCATCTGTCCGAATAGGGAAGGGTTGGATCGGTTTTGCAAGGGCCAACAATGTGAAGGAAGGAGATGTGTGTGTGTTTGAGCTTATAAAGAGGAAGGGCCATGTATTTAAAATAGTTTTGCAACATTGCATTTCCACATCATTCGAATGCAATTCACGCTTCCCTTTGCTCATCTTCGATGTGAGTGCTGCTGAGATTCACTATCCAAGCAAAAATGATAACTCTGAGAAGCAGAACCCAGAATCCAAATGTGTTGGGAAAAGATCATCCAACTTTGATCAATGTGGCTACAACACAAGAAGGAGCCAAAGGCATAAGCCGAAAGATGGAGAAGAAATAATCGACATAGATGGTGATTCTAAAGGAGAAAGATGGCTGGTTAACTGTAGTCCTAGTAAACGTGCTTCTAATGCTAGAATGCATGGGGGCTGGATCGGTTTCGCAAGAGCCAACAATGTGAAGGAAGGAGACGTTTGTGTTTTCGAGCTTATCAAGAGGAAGGACCTTGTATTCAAAGTTACCATCTTTCCCTGTTGA 1395 0.4244 MRSKSRRRRRSFVWPSISPANAEPTHFLKIILPGTIHAHNMSIPKEFVRRFENELFTSEATIGVPDGLVWKMDLKKKSENEAWFCKGWEEFVQYYSISFGFFLVFKYEGNSKFSVVIFDSSVSEIHYPCKDDNPENQQNSVSDQSGYNTRRSQRHKLEDEEEIIDIEDENNALSHGKSGKKDRSGKEIDNSIKHEKEKERSGQVQRSGSFKMKTRTSSRKQRALEAAQNFEPANPHFTAIIRPANLNRCYLDVPAEFRRANMGIMGAMKLEDCSGGKWEVNYGKHVSSVRIGKGWIGFARANNVKEGDVCVFELIKRKGHVFKIVLQHCISTSFECNSRFPLLIFDVSAAEIHYPSKNDNSEKQNPESKCVGKRSSNFDQCGYNTRRSQRHKPKDGEEIIDIDGDSKGERWLVNCSPSKRASNARMHGGWIGFARANNVKEGDVCVFELIKRKDLVFKVTIFPC 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0678 464 MobiDBLite consensus disorder prediction 132 148 - -
Lele09g0678 464 MobiDBLite consensus disorder prediction 356 376 - -
Lele09g0678 464 MobiDBLite consensus disorder prediction 129 219 - -
Lele09g0678 464 ProSiteProfiles B3 DNA-binding domain profile. 236 330 IPR003340 GO:0003677
Lele09g0678 464 Pfam B3 DNA binding domain 238 324 IPR003340 GO:0003677
Lele09g0678 464 Pfam B3 DNA binding domain 35 120 IPR003340 GO:0003677
Lele09g0678 464 Pfam B3 DNA binding domain 405 462 IPR003340 GO:0003677
Lele09g0678 464 ProSiteProfiles B3 DNA-binding domain profile. 405 464 IPR003340 GO:0003677
Lele09g0678 464 SMART B3_2 237 328 IPR003340 GO:0003677
Lele09g0678 464 SMART B3_2 378 460 IPR003340 GO:0003677
Lele09g0678 464 SMART B3_2 27 121 IPR003340 GO:0003677
Lele09g0678 464 CDD B3_DNA 235 326 IPR003340 GO:0003677
Lele09g0678 464 MobiDBLite consensus disorder prediction 168 204 - -
Lele09g0678 464 Gene3D - 19 122 IPR015300 -
Lele09g0678 464 ProSiteProfiles B3 DNA-binding domain profile. 26 121 IPR003340 GO:0003677
Lele09g0678 464 SUPERFAMILY DNA-binding pseudobarrel domain 232 330 IPR015300 -
Lele09g0678 464 PANTHER B3 DOMAIN-CONTAINING 334 457 - -
Lele09g0678 464 CDD B3_DNA 390 463 IPR003340 GO:0003677
Lele09g0678 464 SUPERFAMILY DNA-binding pseudobarrel domain 22 121 IPR015300 -
Lele09g0678 464 Gene3D - 215 329 IPR015300 -
Lele09g0678 464 Gene3D - 356 464 IPR015300 -
Lele09g0678 464 CDD B3_DNA 26 119 IPR003340 GO:0003677
Lele09g0678 464 SUPERFAMILY DNA-binding pseudobarrel domain 390 461 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0678 Lele-ChrLele09 5138805 5142295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0678 409 462 B3 DNA Binding Superfamily AT3G18990 46.296 1.45e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele09g0678 B3 4.6e-15 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0678 09 5138805 5142295 Lele11g0691 11 6554270 6557399 hybridization
Lele09g0678 09 5138805 5142295 Lele12g0649 12 14815701 14817402 hybridization