Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0677 ATGGCTGATCACCTCGCAGATTCGCTCCCAACCGTCGGATCATCAGGACACGACATTATTATTGGCGATTCTCTTCAAACCGATGAATACACAGTCATGTTCGATCTGCGAACCTTCATCATCATCGGCTTCTCGTTCTCGCTCTTCTTTTGCATCGTCTACCACATCCTCTGCAGCCTCTTCTGCTACCAGCTCATCGACACCAGGATTTACCATCACCGCGACGTCAACCTCGAAGAAGGAACAGACCTAATGGCTGCCGGTGGCGAGCACCAGGCGGCGCTGTTTCAGGCCCTGGTTCTGAGCAACATGCAGGCTTGGGTGATGGTGGGAGCATTAATGGAGGATTGGGAGAGCAGAGGGGAAACTCTGAGGGCCATGAAGAAATTGCCGGCATTGGTGAAGTATGGAAGCGAAGATAATAATGCGAATAAAGGGACGAGAAATTGTGTGGAATGTGTGATATGCTTGGAAGATTTTAAGGTTGGAGAAGTGTGTCAGATATTTCCGAGCTGCAATCACGTGTTTCATTCGAATTGCATAGATTGTTGGTTGGCGACCAAGCTTACGTGCCCAACATGTCGGAGTTACATTACGTAA 600 0.49 MADHLADSLPTVGSSGHDIIIGDSLQTDEYTVMFDLRTFIIIGFSFSLFFCIVYHILCSLFCYQLIDTRIYHHRDVNLEEGTDLMAAGGEHQAALFQALVLSNMQAWVMVGALMEDWESRGETLRAMKKLPALVKYGSEDNNANKGTRNCVECVICLEDFKVGEVCQIFPSCNHVFHSNCIDCWLATKLTCPTCRSYIT 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0677 199 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 36 196 IPR044675 -
Lele09g0677 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 199 IPR013083 -
Lele09g0677 199 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Lele09g0677 199 SUPERFAMILY RING/U-box 152 198 - -
Lele09g0677 199 Pfam Ring finger domain 152 195 IPR001841 -
Lele09g0677 199 SMART ring_2 153 194 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0677 Lele-ChrLele09 5135816 5136415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0677 41 196 C3H Transcription Factor Family AT1G53010 28.571 1.66e-17 74.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0677 09 5135816 5136415 Lele11g0689 11 6549758 6550354 hybridization