Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0676 ATGAATCACAGCGACAACGATAGCGGTGGCGACTATAACAATGTAGACATCGAAGCAGACCCAACACCTTTCCCTCCGATGACGTCCTGCATCGCCGCCATGGGAATGGTATTGCTCGTAATAGTTATGAGCTCCGTTGTCACTCTTGTGAGCATGTTCGTCGCCATCTCCTGCTCCTTCACGATCATCCTCATAGAGCACTGGTTCAGAGGAGATGCCTGGGAGATGGAACACATGGAGGATTTCGAACTTGTGGACGGAGGCGTAGAAGCCGACGAGAAGGCAGTGAAGTTTCTGGAAGCATTCTTCAGGGCGGAAGTGAAGGGAAAGGAGGTGGAAGGGACCATCGAGTGTTTCGGAAGCGAAGAAATGGCGGAATTGGGTTATAGCGAGTGTTCGATTTGCATGGATGAGTTCCAGAAAGGAGACAAGTATTTGGTTTTTCTGGGATGTGGCCATATATTTCACTGTAAGTGTATCGCACGCTGGTTGAAGAAGAAGCTGACGTGTCCGGTTTGTCGTTACAGCGTGGCGGCGAATGCGAACGGAACCGGAGGATTCAGAAGGCCGTGGCGGTGGTGGGTGCAACCCTAA 594 0.5135 MNHSDNDSGGDYNNVDIEADPTPFPPMTSCIAAMGMVLLVIVMSSVVTLVSMFVAISCSFTIILIEHWFRGDAWEMEHMEDFELVDGGVEADEKAVKFLEAFFRAEVKGKEVEGTIECFGSEEMAELGYSECSICMDEFQKGDKYLVFLGCGHIFHCKCIARWLKKKLTCPVCRYSVAANANGTGGFRRPWRWWVQP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0676 197 CDD RING-H2_PA-TM-RING 131 174 - -
Lele09g0676 197 SMART ring_2 132 173 IPR001841 -
Lele09g0676 197 SUPERFAMILY RING/U-box 65 180 - -
Lele09g0676 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 186 IPR013083 -
Lele09g0676 197 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Lele09g0676 197 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 37 178 IPR044675 -
Lele09g0676 197 Pfam Ring finger domain 131 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0676 Lele-ChrLele09 5133432 5134025 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0676 33 177 C3H Transcription Factor Family AT5G47610 28.276 1.86e-14 66.2