Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0656 ATGGAGGCCAAGAGTATAGAGAGGAAACGACCATTCACTGAGAAGTCAAAGGATAAAATAATTGAAGAAGCAGAAGATGAAGAAGAGGAAGAAGAGGAAAAGAAGAAAGGGGTTGTTGGTGGGAGTAACAGAAGAGGATCAAGTGGTGGTTATAAAATTTCTTCAGCTTCCTGTCAAGCAGATAGGTGCGGAGCTAACTTGGCTGACGCAAAGCGATACCATCGCCGCCATAAAGTGTGTGAGTTTCATTTCAAGGCGCCCGTTGTGATCGTTGCAGGGCTCAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACATAGGGGAATTTGATGAGGCGAAGAGGAGCTGTCGGAGGAGATTGGCGGAGCACAATGAGAGGCGGCGGAAAAGTAATGCAGAAACTCACAATGATGGCGGCGAATGTCATAATCAGAACCCAATGGAAGGGCGTTTCAGGCATGTTGATGACAGGGGAGGAGTGAATCAGATGAACGTTCATAATTCTGGGAATTGGAGCAGCAAGTCTTTAAATATCAGATAA 546 0.4634 MEAKSIERKRPFTEKSKDKIIEEAEDEEEEEEEKKKGVVGGSNRRGSSGGYKISSASCQADRCGANLADAKRYHRRHKVCEFHFKAPVVIVAGLRQRFCQQCSRFHDIGEFDEAKRSCRRRLAEHNERRRKSNAETHNDGGECHNQNPMEGRFRHVDDRGGVNQMNVHNSGNWSSKSLNIR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0656 181 Coils Coil 115 135 - -
Lele09g0656 181 MobiDBLite consensus disorder prediction 123 138 - -
Lele09g0656 181 Pfam SBP domain 58 131 IPR004333 GO:0003677
Lele09g0656 181 Gene3D - 50 119 IPR036893 GO:0003677|GO:0005634
Lele09g0656 181 MobiDBLite consensus disorder prediction 1 22 - -
Lele09g0656 181 SUPERFAMILY SBT domain 57 136 IPR036893 GO:0003677|GO:0005634
Lele09g0656 181 MobiDBLite consensus disorder prediction 163 181 - -
Lele09g0656 181 MobiDBLite consensus disorder prediction 1 51 - -
Lele09g0656 181 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 140 IPR044817 GO:0003677
Lele09g0656 181 MobiDBLite consensus disorder prediction 123 181 - -
Lele09g0656 181 ProSiteProfiles Zinc finger SBP-type profile. 55 132 IPR004333 GO:0003677
Lele09g0656 181 Coils Coil 14 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0656 Lele-ChrLele09 5000028 5000662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0656 58 140 SBP-box Gene Family AT1G53160 71.429 7.85e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele09g0656 SBP 8.7e-31 No_clan