Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0652 ATGGCTCCCCGAGACCCACCCATCTCCCTCGCCGCCCCCAACGGCCCCACTCTCGCCGCCAAAGAGATCCACTTTCGCGGCGTCCGCAAGCGTCCCTGGGGACGTTACGCTGCCGAGATCCGTGACCCCGGCAAGAAAACTCGCGTCTGGCTTGGCACTTTTGACACCGCTGAGGAGGCGGCGCGTGCCTACGACACCGCTGCACGCGAGTTCCGTGGAGCTAAGGCCAAAACCAATTTCCCCACTCCTTCTGAGCTTGTAAATAACACCAACAACAACAACTCTACCCGCAGTCCTAGCCAGAGCAGTACCCTCGATTCTTCGTCGCCTCCACCGCCGCCTTTAGACCTTAGCCTCACACCGTGTTCTGCCGGCGTTGGTTCTATGGGGTTTCCGGTCATCCCCGTGGCTCGTCCCGTTCTGTTCTTCGACGCGTTTGCGAGGGCCGACAACATGAGAAGCGTTGGCCGTCGCGAGATGTGCGGGTTTCACCGCCCGGTCACTGATTTGCGTCCCGCCGCTGGGAGTGTGCAGAGTGACTCCGACTCATCGTCTGTCGTCGACTACGAGCGTGCTCCACAGCCTCGGAGAGTTCTGGATCTCGACCTTAACCTTGCTCCTCCGGCGGAGGTTGCCTGA 639 0.6119 MAPRDPPISLAAPNGPTLAAKEIHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGAKAKTNFPTPSELVNNTNNNNSTRSPSQSSTLDSSSPPPPPLDLSLTPCSAGVGSMGFPVIPVARPVLFFDAFARADNMRSVGRREMCGFHRPVTDLRPAAGSVQSDSDSSSVVDYERAPQPRRVLDLDLNLAPPAEVA 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0652 212 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 24 192 - -
Lele09g0652 212 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Lele09g0652 212 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Lele09g0652 212 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Lele09g0652 212 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Lele09g0652 212 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Lele09g0652 212 Gene3D AP2/ERF domain 24 82 IPR036955 GO:0003700|GO:0006355
Lele09g0652 212 MobiDBLite consensus disorder prediction 81 105 - -
Lele09g0652 212 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Lele09g0652 212 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Lele09g0652 212 MobiDBLite consensus disorder prediction 74 120 - -
Lele09g0652 212 MobiDBLite consensus disorder prediction 174 188 - -
Lele09g0652 212 MobiDBLite consensus disorder prediction 171 193 - -
Lele09g0652 212 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0652 Lele-ChrLele09 4959240 4959878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0652 20 170 AP2-EREBP Transcription Factor Family AT3G15210 56.886 3.02e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele09g0652 AP2 8.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0652 09 4959240 4959878 Lele13g0793 13 19764961 19765656 ECH
Lele09g0652 09 4959240 4959878 Lele14g0683 14 18133787 18134482 ECH
Lele09g0652 09 4959240 4959878 Lele15g1686 15 10033472 10034167 ECH
Lele09g0652 09 4959240 4959878 Lele16g1724 16 10021738 10022433 ECH
Lele09g0652 09 4959240 4959878 Lele09g0652 09 4959240 4959878 ECH
Lele09g0652 09 4959240 4959878 Lele11g0667 11 6361751 6364150 hybridization
Lele09g0652 09 4959240 4959878 Lele12g0673 12 15006717 15007358 hybridization