Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0648 ATGGATAGCTACTTCCATGTCGATAATGGTGATGCTCATCTTCCACCTGGGTTTCGCTTCCACCCAACTGACGAAGAACTCATCACCTTTTACCTCCTCAAGAAGGTTCTAGACAGCACCTTCACAGGAAGAGCCATTGCTGAAGTTGATCTTAACAAGTGTGAGCCATGGGAGCTTCCTGGGAAGGCGAAGATGGGTGAGAAAGAGTGGTACTTCTTCAGCCTTCGAGATCGAAAGTACCCCACTGGTCTGCGAACTAATAGGGCTACAGAAGCCGGATACTGGAAGGCAACTGGAAAAGACAGAGAGATTTACAGCTCCAAAACTTGCTGTCTCGTTGGAATGAAGAAGACACTGGTTTTCTACAGAGGAAGAGCTCCAAAAGGAGAGAAAAGCAACTGGGTCATGCATGAGTATCGTCTTGAAGGCAAATTTGCTTATCATTACCTTTCACGCAGCTCCAAGGATGAATGGGTCATCTCGCGTGTTTTCCAGAAGAGTCTCTCCTCCACTGGGAACGGTAGCTCCGCCGTGTCTTCCGCCGGTGGATCCAAGAAGAGTAACCTGAGAATGAGCTCTTCTGTTAACATGAGCCTTTACCCAGAACCCAGTTCTCCTTCCTCCATCTATCTTCCTCCTTTGCTTGACTCGTCTCCTTACGCCGCCGCCAACGACCGTGACAGCTGCTCCTACGACGGCAGCAGCACTACTCCGAGGGAGCACGTGTCCTGTTTCTCCACATTCTCTGCGTCTGCTGCCGCCAACAACCTCTCCAATGTTAGCTATGAACTCGCCCCTCCTCCACCGCCGCCGCCGCCAGTGACTCTGGACCCATTTGCTCGATTCCAGAACGTCGGTATTCCTGCGTTCCCAAGCCTAAGGTCACTGCAGGAGAATCTTCAACTTCCTTTCCTGACTCCGGCCATAGCTCCCGGTGCCTCCGGTTGTGACATGATCAACGGATGGGCTAAGCCGGAGGAGCAGACAGTGGCGGGTGGTGGATCTTCTGCCATGGCGCTGTGTCCGTCGTCGGAGCTTGATTACATGTGGGGCGGCTACTAG 1062 0.5254 MDSYFHVDNGDAHLPPGFRFHPTDEELITFYLLKKVLDSTFTGRAIAEVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCCLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKSLSSTGNGSSAVSSAGGSKKSNLRMSSSVNMSLYPEPSSPSSIYLPPLLDSSPYAAANDRDSCSYDGSSTTPREHVSCFSTFSASAAANNLSNVSYELAPPPPPPPPVTLDPFARFQNVGIPAFPSLRSLQENLQLPFLTPAIAPGASGCDMINGWAKPEEQTVAGGGSSAMALCPSSELDYMWGGY 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0648 353 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Lele09g0648 353 FunFam NAC domain-containing protein 100-like 23 170 - -
Lele09g0648 353 MobiDBLite consensus disorder prediction 169 189 - -
Lele09g0648 353 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Lele09g0648 353 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
Lele09g0648 353 SUPERFAMILY NAC domain 10 166 IPR036093 GO:0003677|GO:0006355
Lele09g0648 353 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0648 Lele-ChrLele09 4940796 4942501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0648 4 305 NAC Transcription Factor Family AT5G53950 62.229 1.46e-120 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele09g0648 NAM 2.7e-40 No_clan