Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0636 ATGTTCTCTGAGCACGGAAACCAACATTATAGATATTTCATTTGGGATATATATAAGGTTTTACGAATTGGCAAACCATCAGAGCGGCTGCCAACATCTCCAGCAAAGTTTTTTTCTAAGTGTCAGATGACTGATTTGGAAATGGATCGACGAAGGCAAGACTATTATCATTCTGAACCCTGTGTTGTTCTGAGGGCCCCCAACATCTCACAGCCAAATATCCACACAATGGTGGCAGCTTCAGGAAACACTAGTAATATTGATTCCCACTATTGGCCAGATGCTTATGACAATTGTTTGATGTATGGGATGACACAATTTAATGGGATTCATCATCAACCCAATCTTGACGGGGGTGTTGCTGAGTCATCTAGTTTGTTTTTTCCTGCCTCTGGTGCCAGTGTAGTACCTCAGCCCATTAATTACCAAGCATCTGATCAATTGCGAGCCCCAGGCGTTTATGCTGTCTCTGGAGTTTTCATGGATGATGCAAGATGTCCATACAAACAAAAAATGACTGAGGGCATCAGAGGAAATTACCAACATTTTAATGCTGCAGCTAGTTCTTCGGTAGCTCCTCCAAATGCAGGCCACCCTGATGAGGTTACTGCATCATTTTCTTTTCCTCAATTTAGAGGAAATCACGTTCCATCACTTGTAGAAATTGGACCTCATGGTAATTTGTGGAGCAGATCTGGTGACTCAGTTATGGTGCATGAACACAACCATTTGATGCAAGGAAACTATTTGGGCCAGCATTTTCAACCAGCTCCACCTCCCTGGTTGGACCAGCAGTTGAATGGTACTAACAGGGAAGGACATAATATGGCCTGGAATCAGTCTCATTCAATGCCTTATATGCAAGCAGCTGTTAATGGAAGTTCATTGGAGAATGCAAATACAGGTATGCAGAGATATCATGATACAGGTAGCCTTAGGTTTGCTCATCCTCCTCCTGTTAACCACCAGCGCCATAATTATCACCTTCCTACTATGCCTATGCAAGGAGTAAGAGGCCACAATATCAACTTTCACCCTCCAGTTACTGCCACTACTTATAGAGGGGTTCCGTCAAATTCTCCACATGGTAGCATTATCCCAGTGCAGTATGGTTTTGGGTTGGGTGCTAGGCATGTTGGCCCTGCACCGTCAGCAAGCCAACGGATACATCGTTCTCATAGAGGAGTCATGCCCGATACGTCTCTTAGACATCACAATTCCCGTCCAATGAGTTTTCTCCACGTTGATGATGTTGCTTTACTTGACGAAGTGGAAAATTTAGTCGACCATCGTCATGGTGATATGCGTTTGGACATAGGGGATATGTCTTATGAGGAGCTTCTTGCTTTGGGTGAGCAAATTGGCAGTGTGAACACAGGTTTGTCCGAGGAAACTATCACAACTCAATTGAAAACAAAAACTTTCGAGCCCTCCTCCACCACTGGTAATCCGGTGGAGGTAGCTTCCGAGGATGAGGAAACTGATTCTTGCATCATATGCCTGGACGAATATGAGAACCAAGAGACAGTTGGAATTCTCGAATGCGGGCACGATTATCACGCCGATTGCTTGAAGAAATGGTTGCTACTGAAGAACGTCTGCCCTATATGCAAATCAGAAGCATTTCCCCCTAGAAGGAAGGACGTATAA 1650 0.4424 MFSEHGNQHYRYFIWDIYKVLRIGKPSERLPTSPAKFFSKCQMTDLEMDRRRQDYYHSEPCVVLRAPNISQPNIHTMVAASGNTSNIDSHYWPDAYDNCLMYGMTQFNGIHHQPNLDGGVAESSSLFFPASGASVVPQPINYQASDQLRAPGVYAVSGVFMDDARCPYKQKMTEGIRGNYQHFNAAASSSVAPPNAGHPDEVTASFSFPQFRGNHVPSLVEIGPHGNLWSRSGDSVMVHEHNHLMQGNYLGQHFQPAPPPWLDQQLNGTNREGHNMAWNQSHSMPYMQAAVNGSSLENANTGMQRYHDTGSLRFAHPPPVNHQRHNYHLPTMPMQGVRGHNINFHPPVTATTYRGVPSNSPHGSIIPVQYGFGLGARHVGPAPSASQRIHRSHRGVMPDTSLRHHNSRPMSFLHVDDVALLDEVENLVDHRHGDMRLDIGDMSYEELLALGEQIGSVNTGLSEETITTQLKTKTFEPSSTTGNPVEVASEDEETDSCIICLDEYENQETVGILECGHDYHADCLKKWLLLKNVCPICKSEAFPPRRKDV 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0636 549 SMART ring_2 497 537 IPR001841 -
Lele09g0636 549 ProSiteProfiles Zinc finger RING-type profile. 497 538 IPR001841 -
Lele09g0636 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 165 542 IPR045191 GO:0061630
Lele09g0636 549 Pfam Ring finger domain 495 538 IPR001841 -
Lele09g0636 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 454 542 IPR013083 -
Lele09g0636 549 SUPERFAMILY RING/U-box 490 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0636 Lele-ChrLele09 4857208 4866045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0636 413 542 C3H Transcription Factor Family AT2G15530 45.522 2.07e-31 127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0636 09 4857208 4866045 Lele09g0636 09 4857208 4866045 ECH
Lele09g0636 09 4857208 4866045 Lele11g0649 11 6261907 6264076 hybridization
Lele09g0636 09 4857208 4866045 Lele12g0687 12 15095101 15097661 hybridization