Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0584 ATGAAGATTCAGTGCAGTGTGTGTGAAGCTTCGGAGGCTAAGGTTTTGTGTTGTGCAGACGACGCGGCGCTGTGTTGGGAATGTGACGAGAAAGTTCATGCCGCTAATAAGCTTGCCGGCAAGCACCAGAGAGTTCCTCTTTCTTCCTCTGGTTCTCATATGCCCAAATGCGATATTTGTCAGGAATCTTTTGGCTATTTCTTCTGTCTAGAGGACAGGGCTTTACTCTGCAGAAAATGTGATGTGGCAATACACACAGCAAATTCCTATGTTTCCACTCATCAGAGGTTTCTATTGGCTGGTATAAGAGTAGGACTTGAAGCTACCGAGCCCGGTGCTTCCTCGTCTTCTGCTAAGTTACAGTCTGAGGAGAAGAGGTCAGATACAAAATCCTCTTCTGCCTCTAGAAGGGTTTCTTCAGTACCTGAGTTATCTGAACAAAATGAAGTTATTCCTTCCCAAGGTGGTGGTGGAGGAGCTGGGCAGTTTCCACCATCTAAGGGGTCTTATGGTGGCGGTTCAACTCCCGGAGACTTACCAAACTGGCACATTGACGAATTTTGTTGTGGGAAGCCAGGGGATTGTGATTCTCCTGGTTTTAAATCCGGCGAAGAGGAAATAGATGATGATGAGGATGACGACGATGACTGCTTCAGGCCATTTTCAGATTCATCTTGGATGGTTCCTCAGATCCCTTCCCCTCCTACAGCTGCAGGGTTAAATTGGCCTGAAGACACTCAATATACACATGATAATGCTATGTTTGTTCATGTTCCAGACATATGTTTTTCTGACTCACAACAATGTGAGGCTGAGGCTTTGAAGTATTATTATCCTTCTTTTCAGGTATTCAAGTTGATTATTAGCTTCATGTTTGTATTCAATTTGTCTTGTTGGAGCAATTCTACCTCATTAATTAGCTTCATGTTCATGGATGTGTCAATTAAGATTGGTTTTGGAGCATTCTTGAGTTCAATAGAATCCATTGCAGATGCATAA 999 0.4354 MKIQCSVCEASEAKVLCCADDAALCWECDEKVHAANKLAGKHQRVPLSSSGSHMPKCDICQESFGYFFCLEDRALLCRKCDVAIHTANSYVSTHQRFLLAGIRVGLEATEPGASSSSAKLQSEEKRSDTKSSSASRRVSSVPELSEQNEVIPSQGGGGGAGQFPPSKGSYGGGSTPGDLPNWHIDEFCCGKPGDCDSPGFKSGEEEIDDDEDDDDDCFRPFSDSSWMVPQIPSPPTAAGLNWPEDTQYTHDNAMFVHVPDICFSDSQQCEAEALKYYYPSFQVFKLIISFMFVFNLSCWSNSTSLISFMFMDVSIKIGFGAFLSSIESIADA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0584 332 MobiDBLite consensus disorder prediction 133 152 - -
Lele09g0584 332 FunFam B-box zinc finger protein 22 1 93 - -
Lele09g0584 332 CDD Bbox1_BBX-like 56 99 - -
Lele09g0584 332 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lele09g0584 332 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lele09g0584 332 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 266 - -
Lele09g0584 332 MobiDBLite consensus disorder prediction 110 176 - -
Lele09g0584 332 CDD Bbox1_BBX-like 5 47 - -
Lele09g0584 332 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Lele09g0584 332 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele09g0584 332 Gene3D Classic Zinc Finger 1 93 - -
Lele09g0584 332 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0584 Lele-ChrLele09 4442674 4445119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0584 1 264 C2C2-CO-like Transcription Factor Family AT1G78600 44.089 6.66e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lele09g0584 zf-B_box 1.2e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0584 09 4442674 4445119 Lele09g0584 09 4442674 4445119 ECH
Lele09g0584 09 4442674 4445119 Lele11g0594 11 5841625 5843987 hybridization
Lele09g0584 09 4442674 4445119 Lele12g0739 12 15524653 15526681 hybridization