Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0580 ATGCCTGGGAATAAGTATAACGGTAATCCTAATCTTTTTCCAGGTCGTGTTGAACGACTTGTCAGAGAAAGAGAGCTGAGAAAAAGCGGCAGGCCTTCTCATTTCAATGAGTCAGCTGATAATAATAATAATAGGGTTACTGAACCGTTTGAGCATAACCAGCGTTTAAGGGAAGATAATAATAATTCAGGGGCTTCTCATGCACAATACCTGGAGGGAACTGCTAGGGGGCTTAGTGAGGGATGTGAAAGACAAGATGTGAGGCCTTATAGACAACGACTTTTGGTGGTGGCCAACAGGCTGCCAGTCTCAGCAGTTAGGAGAGGCGAAGATTCATGGTCTCTGGAGATTAGTGCTGGAGGTCTAGTTACCGCTCTTTTAGGTGTGAAGGAGTTTGAGGCAAGGTGGATAGGCTGGGCTGGTGTCAACGTGCCAGACGAGATTGGACAGAAGGCACTTACTAAAGCTTTGGCTGAAAAGAGGTGCATTCCTGTATTTCTTGATGAAGAGATTGTTCACCAATATTATAATGGTTACTGCAACAACATCCTGTGGCCCCTTTTTCATTACCTTGGACTACCCCAAGAAGATCGCCTTGCTACCACACGGAGCTTCCAGTCTCAGTTTGCAGCATACAAGAAAGCAAACCAAATGTTTGCTGATGTTGTTAACAAGCACTATGAAGATGGAGATGTTGTTTGGTGCCATGACTACCATCTTATGTTTCTTCCAAAATGTTTAAAGGAATATGACAGTAAAATGAAAGTTGGCTGGTTTCTTCACACCCCATTTCCATCTTCTGAAATTCATAGGACATTACCATCACGTTCAGAGCTCCTTCATTCTGTTCTTGCTGCTGATTTAGTAGGATTTCACACCTATGATTATGCACGCCATTTTGTTAGTGCCTGTACTCGCATTCTTGGACTTGAGGGCACTCCTGAAGGGGTTGAGGATCAGGGGAGATTGACTCGAGTTGCTGCATTTCCAATTGGGATAGACTCTGATCGATTCATACGTGCACTTGAGCTTACTCAAGTGAAGGAACATATCAAAGAATTGGAAAAAAGATTTGAGGGTAGAAAGGTAATGTTAGGTGTTGATCGTCTTGATATGATTAAAGGGATTCCTCAGAAAATTCTTGCATTTGAGAAGTTTTTGGAAGAGAATGCATATTGGCGTGATAAAGTAGTTTTGCTTCAAATTGCCGTGCCAACAAGAACAGATGTTCCTGAGTATCAAAAGCTGACAAGCCAAGTTCATGAAATTGTTGGTCGCATTAATGGAAGATTTGGAACATTGATTACTGTTCCTATACATCACCTGGACCGTTCACTTGATTTTCATGCACTATGTGCTTTATATGCTGTTACTGATGTAGCACTAGTCACATCTTTGAGGGATGGGATGAATCTTGTCAGTTATGAATTTGTAGCCTGCCAGGAGAAAAAGAAAGGAGTTCTCATTCTTAGTGAATTCGCTGGCGCTGCACAGTCTCTAGGCGCGGGAGCAATTCTGGTTAACCCCTGGAACGTCACAGAAGTTGCAGCTGCAATTGCACAGGCTCTAAATATGTCATCTGGGGAAAGAGAGAAACGTCATAAGCACAATTATGTACATGTAACGACCCACACTGCTCAAGAATGGGCAGAGACTTTTGTGAGTGAACTAAATGATACTGTGGTCGAGGCACAACTAAGGACAAGACAAATTCCACCCCTACTTCCAACCAAGACTACGATTAAACGCTATCTGCAGTCAACTAATCGATTGCTTATATTGGGATTCAATGCAACTTTAACTGAACCAGTCGAAAAGAAAGGTGATCAGATTAAGGAAATGGAACTCAAGGTGCATCCAGAATTAAAACAACCATTGACAGCACTTTGCAATGACCCAAAGACCACAATTGTTGTGCTTAGTGGAAGTGGTCGAAACGTCCTATATAATAGCTTTAAGGAATACAACATGTGGCTAGCCGCAGAGAACGGGATGTTTTTACGCCCTGCAAAGGGAGAATGGATGACAACGATGCCAGAGCATCTGAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGAATACTTCACAGCAAGAACCCCGCGGTCTCATTTCGATCTTGAAGAAAGGGAGACCTCGCTAGTATGGAACTACAAATATGCCGATGTCGAGTTTGGAAGACTTCAAGCAAGGGATATGTTGCAGCATCTCTGGACTGGTCCAATTTCCAATGCATCAGTTGATGTTGTTCAAGGTAGCCGATCAGTCGAAGTGCGAGCTGTTGGTGTTACCAAGGGAGCAGCCATTGACCGCATCTTGGGTGAGATAGTTCACAGTAAATCCATGACAGAACCAATCGATTATGTTCTTTGTATAGGACATTTTCTTTCAAAGGATGAAGATGTTTATTCCTTCTTCGAGCCGGAGCTTCCTTCTAGCGGCGTGGGTGTCACGCGAGCCAAGGCGTCGGAAGCAGCTAAGTTTCCGGCAGAGAGACGATACTCGCTGAAGATCCCGACCAGTACTAAAACTGGAACAAAGTCATCATCTCAAAATAAGGCACAACGGCCTCTGTCAAATTCTGAGAAGAAAACCACAAACCATAACTGTAATGCACAAAGGAAGGCAGCACCTGAGAACATATCATGGAATGTGCTTGACCTCGACAAGGGGAATTACTTCTCTTGTGCCGTTGGCCGAACCCGAACAAATGCTCGCTATACGCTTGGATCCTCAGATAATGTTGTTTCCTTCCTCAGGGAACTCGCTCAAGCTTCTTCTCCAAACCATTTATCAACCAATTAA 2808 0.4352 MPGNKYNGNPNLFPGRVERLVRERELRKSGRPSHFNESADNNNNRVTEPFEHNQRLREDNNNSGASHAQYLEGTARGLSEGCERQDVRPYRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVTALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEDGDVVWCHDYHLMFLPKCLKEYDSKMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALELTQVKEHIKELEKRFEGRKVMLGVDRLDMIKGIPQKILAFEKFLEENAYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLITVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGAILVNPWNVTEVAAAIAQALNMSSGEREKRHKHNYVHVTTHTAQEWAETFVSELNDTVVEAQLRTRQIPPLLPTKTTIKRYLQSTNRLLILGFNATLTEPVEKKGDQIKEMELKVHPELKQPLTALCNDPKTTIVVLSGSGRNVLYNSFKEYNMWLAAENGMFLRPAKGEWMTTMPEHLNMEWVDSVKHVFEYFTARTPRSHFDLEERETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTEPIDYVLCIGHFLSKDEDVYSFFEPELPSSGVGVTRAKASEAAKFPAERRYSLKIPTSTKTGTKSSSQNKAQRPLSNSEKKTTNHNCNAQRKAAPENISWNVLDLDKGNYFSCAVGRTRTNARYTLGSSDNVVSFLRELAQASSPNHLSTN 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0580 935 Gene3D Glycogen Phosphorylase B; 341 542 - -
Lele09g0580 935 Gene3D - 680 762 - -
Lele09g0580 935 MobiDBLite consensus disorder prediction 25 47 - -
Lele09g0580 935 SUPERFAMILY HAD-like 590 829 IPR036412 -
Lele09g0580 935 MobiDBLite consensus disorder prediction 838 875 - -
Lele09g0580 935 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 92 561 - -
Lele09g0580 935 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 93 558 IPR012766 GO:0003825|GO:0005992
Lele09g0580 935 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 85 339 - -
Lele09g0580 935 Gene3D - 614 806 IPR023214 -
Lele09g0580 935 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 85 925 IPR001830 GO:0003824|GO:0005992
Lele09g0580 935 CDD GT20_TPS 93 558 IPR001830 GO:0003824|GO:0005992
Lele09g0580 935 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 340 542 - -
Lele09g0580 935 MobiDBLite consensus disorder prediction 837 875 - -
Lele09g0580 935 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 680 762 - -
Lele09g0580 935 CDD HAD_TPP 591 823 - -
Lele09g0580 935 Pfam Glycosyltransferase family 20 93 558 IPR001830 GO:0003824|GO:0005992
Lele09g0580 935 FunFam Alpha,alpha-trehalose-phosphate synthase 614 685 - -
Lele09g0580 935 Pfam Trehalose-phosphatase 613 826 IPR003337 GO:0003824|GO:0005992
Lele09g0580 935 Gene3D Glycogen Phosphorylase B; 85 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0580 Lele-ChrLele09 4396599 4404496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0580 1 928 Trehalose Biosynthesis Gene Families AT1G78580 77.568 0.0 1484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0580 09 4396599 4404496 Lele10g0532 10 3851832 3859919 ECH
Lele09g0580 09 4396599 4404496 Lele09g0580 09 4396599 4404496 ECH
Lele09g0580 09 4396599 4404496 Lele11g0591 11 5797295 5806222 hybridization
Lele09g0580 09 4396599 4404496 Lele12g0743 12 15563799 15572033 hybridization