LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele09g0555	ATGGATATAACAGAAATTACCATATTGCATCATGCGTGCATTGTGCTTCTGGGGCTTTGGCTGTTATCTGCCTTCAACTGCTGCCACCCCGTTGCTTATTTTGTAGCACTGATCTATCTCTACCTGGTTCATGAACGTTATGTCACAAGACTGCGGAGGAAATTACAATTTGAGGAGAGGAAGCAAGCTAATCAAAGAAGGGTGCTTTCTGATTCTGAATCAGTGCGTTGGTTGAACCATGCAGTTGAAAACATATGGCCTATATGTATGGAACAAATTACCTCTCAGAAGATTTTGCTCCCAATCATACCTTGGTTCTTGAAGAAGTACAAACCTTGGACTGCTAAAAAAGCCGTGGTTCAGCACCTGTACCTGGGGAGAAACCCCCCTTTATTTACTGAAATGAGGGTGCTTCGTCAAAATGGTGATGACCACTTGGTTCTGGAATTAGGAATGAATTTTCTTACGGCTGATGACATGAGTGCAATAATTGCTGTAAAACTAAGGAAAAGATTAGGCTTTGGGATGAGGGCAAAGCTGCACATAACGGGGATGCATGTTGAAGGGAAGGTTTTGGTTGGGGTAAAATTTCGCCAAACATGGCCTTTCCTTAGTCGTTTGCGTGTATGCTTTGTCGAACCTCCATACTTCCAAATGACTGTTAAGCCTATATTTACTCATGGGCTTGATGTGACAGAAGTTCCTGGGATTGCTGGATGGCTAGATAAGCTTTTGTCTATCGCATTTGAACAGACTCTTGTTGAGCCTAATATGCTAGTTGTTGATGTTGAGAAATTTGCTTCACCTCAGCCAGAGCCTTGGTTCTCCATCAATGAGAAGGAACCTGTTGCCTATGCCCATGTAGAAGTTGTTGAAGGATCTGACATGAAGCCATCAGACCTAAATGGGTTAGCAGATCCATATGTAAAAGGTCATTTAGGTGGCTACAGATTCAGGACAAAGATACAAAGGAAAACACTTGCTCCAAAATGGCTAGAAGAATTTAAAATCCCCATTGTAACATGGGAGTGTGCTAATGTGTTGGCTATGGAAGTTTCTGACAAGGACCACTTTTATGATGATAACCTCGGAAACTGTTCTGTCAACCTTAGTGATTTGAGGGATGGCCAGCGACATGATATGTGGTTACCTCTTCAGAATATTAAAACGGGGAGGTTGCACCTGGCTATAACTATTCTTGAAGACAATGCAAAGGAGGTTGATAAAACATGTAACGAGGAAGCAATAGATGCTGAACAAAAAAGGAATTCCTTTGCGAATGAGACTAATAATAAAAATTCATTCTCATCTGTTTCATCAGAAAAATCCCAAAAAGTTGCAGATAACTATGAGCCTATAGATGTTGAAGGGCAAAAGGATACTGGAATTTGGGTTCATCAACCAGGTAGTGAAGTGTCCCAAACATGGGAACCTAGGAAAGGGAGGAGCAGACGCCTTGATACTGAAATTCACAGGGAGCCTAATGATTTATGTGGAAGTTTTAATTCAGCAGCATCTGGATCTTCGAACAATGACTGCAGCAGTCCTGACGATAACCCAGAGCATAAGCACAGAATAAAATCATTTAGGAAGGGACTGCACAAGATTGGGTCAGTGTTTCGAAGGGGTCCAAAGAATGAACCTCCAACACCGACATCAGCTCGTGGTGTTGAAGAGGCTGTTCCATCTCCGCATGCAAACATTAAGGCTGAGAATGCCAAGGAGATTGGTGTGCGCTTTGTTGTGGAGGATAACATTTCTGGGCTTGCCTCGGGTAAGGTTCAGATAGAAGGAACATCCCCTGAAAGCAATGGTTCTGAGAGCCCAGGAAAGGGAAATGCCAAAGATAAGGCAAAGAATATGCTGAAGCATGCTGCAGGGAAATCAGCTCGTGGCCTAAAGCACATGCTTTCCTATAAATCAAGAAAATCTGAAGTTGACTCACTTCGAGAAACAACTAGGGTCTCAGAAGAATCTGACTCTTCTGATGATGATGATGATTCCGTTTCAGTTCCATCACCCAGCGATGGAAGAATTCCCGTTGCTTCCAAGGTCATTGTTTCTTTCAACAATGATCCCCACTTCAATTCCAGTGAGAATGTTGTGGTTCAGACACATCTGCCTGACGTTACTTTGGGCAATGAAGTTCCGGCAAAGAAGCTAGGTGTTGAAGAAGAGCCTGCAAAGCATGACAGCCCTGACAGATCTTCAAAAGCTTATGTTGAAACAAAGCATGGCATCCCTAAGAAATCTTCAGAAGATTATGTTGAAACAAAGCATGACAGATTGAGCGGTGGGACGGAACAGATATGA	2313	0.428	MDITEITILHHACIVLLGLWLLSAFNCCHPVAYFVALIYLYLVHERYVTRLRRKLQFEERKQANQRRVLSDSESVRWLNHAVENIWPICMEQITSQKILLPIIPWFLKKYKPWTAKKAVVQHLYLGRNPPLFTEMRVLRQNGDDHLVLELGMNFLTADDMSAIIAVKLRKRLGFGMRAKLHITGMHVEGKVLVGVKFRQTWPFLSRLRVCFVEPPYFQMTVKPIFTHGLDVTEVPGIAGWLDKLLSIAFEQTLVEPNMLVVDVEKFASPQPEPWFSINEKEPVAYAHVEVVEGSDMKPSDLNGLADPYVKGHLGGYRFRTKIQRKTLAPKWLEEFKIPIVTWECANVLAMEVSDKDHFYDDNLGNCSVNLSDLRDGQRHDMWLPLQNIKTGRLHLAITILEDNAKEVDKTCNEEAIDAEQKRNSFANETNNKNSFSSVSSEKSQKVADNYEPIDVEGQKDTGIWVHQPGSEVSQTWEPRKGRSRRLDTEIHREPNDLCGSFNSAASGSSNNDCSSPDDNPEHKHRIKSFRKGLHKIGSVFRRGPKNEPPTPTSARGVEEAVPSPHANIKAENAKEIGVRFVVEDNISGLASGKVQIEGTSPESNGSESPGKGNAKDKAKNMLKHAAGKSARGLKHMLSYKSRKSEVDSLRETTRVSEESDSSDDDDDSVSVPSPSDGRIPVASKVIVSFNNDPHFNSSENVVVQTHLPDVTLGNEVPAKKLGVEEEPAKHDSPDRSSKAYVETKHGIPKKSSEDYVETKHDRLSGGTEQI	770

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele09g0555	770	ProSiteProfiles	C2 domain profile.	269	383	IPR000008	-
	Lele09g0555	770	SMART	C2_3c	285	382	IPR000008	-
	Lele09g0555	770	Gene3D	C2 domain	274	401	IPR035892	-
	Lele09g0555	770	MobiDBLite	consensus disorder prediction	422	446	-	-
	Lele09g0555	770	MobiDBLite	consensus disorder prediction	459	523	-	-
	Lele09g0555	770	Pfam	C2 domain	287	385	IPR000008	-
	Lele09g0555	770	MobiDBLite	consensus disorder prediction	539	573	-	-
	Lele09g0555	770	MobiDBLite	consensus disorder prediction	638	657	-	-
	Lele09g0555	770	ProSiteProfiles	Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile.	71	264	IPR031468	GO:0008289
	Lele09g0555	770	MobiDBLite	consensus disorder prediction	714	770	-	-
	Lele09g0555	770	MobiDBLite	consensus disorder prediction	592	610	-	-
	Lele09g0555	770	MobiDBLite	consensus disorder prediction	422	447	-	-
	Lele09g0555	770	MobiDBLite	consensus disorder prediction	499	515	-	-
	Lele09g0555	770	MobiDBLite	consensus disorder prediction	719	770	-	-
	Lele09g0555	770	MobiDBLite	consensus disorder prediction	477	494	-	-
	Lele09g0555	770	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	283	399	IPR035892	-
	Lele09g0555	770	MobiDBLite	consensus disorder prediction	592	680	-	-
	Lele09g0555	770	PANTHER	C2 DOMAIN-CONTAINING PROTEIN-LIKE	1	712	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele09g0555	Lele-ChrLele09	4195593	4201133	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele09g0555	281	421	Lipid Metabolism Gene Families	AT3G61300	27.397	2.63e-08	55.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele09g0555	09	4195593	4201133	Lele09g0555	09	4195593	4201133	ECH
	Lele09g0555	09	4195593	4201133	Lele11g0562	11	5584690	5590233	hybridization
	Lele09g0555	09	4195593	4201133	Lele12g0769	12	15737048	15751529	hybridization