Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele09g0547 | ATGGCTGCGGTTGCTGAGATTTCCGTTGATTCAGCCACTGCGACCAAATTGGACTCGAAGCCGCAGCCTGAAACCGAATTTAATGTACAGAAGCTTGTTGATATGTTTACAAAGCTGAATCCTTCAGCTAAAGAGTTTTTCCCATCATCGCATTCTCATAACCATCTTTTTCATCTGAGCTCTAATCAGTTCTTTCCTAACAATTTTCTGGTTAAGCCGTCAGATAATGACAATTACTCAAACAACCGCAGGAGAAGAAACAGTTTCAATCAGGGAAGAAGGCTGAATGGAAGAGTGCATAAGGCCCAAAGAGAAGACAGCATTAGAAGAACAGTATATGTTTCTGACATTGATCAGCATGTAACTGAGGAGCGGCTTGCTGCCTTATTTTCCAGTTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAATCCTTCGTTTTGCATTTGTGGAGTTTGCAGATGAACGAGGTGCAAGAGCAGCTCTAAACCTTGGTGGTACTGTTCTTGGCTACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCCATCCTTCCCGTGAATCCTACATTCCTACCCAGGTCAGATGATGAACGGGAGATGTGTAGCAGGACTGTTTATTGTACAAATATTGACAAAAAGATTTCTCAGGCTGAAGTGAAGAATTTTTTTGAAACAGCTTGTGGAGAGGTTACGCGCTTGAGGCTTTTAGGGGATCATGTGCATTCAACACGAATTGCTTTTGTGGAATTTGCAATTGCAGAAAGTGCCATTATTGCTCTAAATTGTAGTGGGATGCTCTTGGGAACTCAGCCTATCAGGGTAAGTCCTTCAAAGACACCTGTGAGGCCAAGGATCGCTCATCCAATGTCGTGTTGA | 888 | 0.4291 | MAAVAEISVDSATATKLDSKPQPETEFNVQKLVDMFTKLNPSAKEFFPSSHSHNHLFHLSSNQFFPNNFLVKPSDNDNYSNNRRRRNSFNQGRRLNGRVHKAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDPHSILRFAFVEFADERGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKISQAEVKNFFETACGEVTRLRLLGDHVHSTRIAFVEFAIAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRIAHPMSC | 295 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele09g0547 | 295 | CDD | RRM1_CID8_like | 108 | 187 | IPR034823 | - | |
Lele09g0547 | 295 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 207 | 283 | IPR000504 | GO:0003723 | |
Lele09g0547 | 295 | SMART | rrm1_1 | 208 | 279 | IPR000504 | GO:0003723 | |
Lele09g0547 | 295 | SMART | rrm1_1 | 111 | 181 | IPR000504 | GO:0003723 | |
Lele09g0547 | 295 | CDD | RRM2_CID8_like | 203 | 284 | IPR034825 | - | |
Lele09g0547 | 295 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 110 | 185 | IPR000504 | GO:0003723 | |
Lele09g0547 | 295 | FunFam | Polyadenylate-binding protein-interacting protein 11 | 75 | 187 | - | - | |
Lele09g0547 | 295 | Pfam | Ataxin-2 C-terminal region | 35 | 51 | IPR009818 | - | |
Lele09g0547 | 295 | SUPERFAMILY | RNA-binding domain, RBD | 84 | 186 | IPR035979 | GO:0003676 | |
Lele09g0547 | 295 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 209 | 276 | IPR000504 | GO:0003723 | |
Lele09g0547 | 295 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 112 | 174 | IPR000504 | GO:0003723 | |
Lele09g0547 | 295 | MobiDBLite | consensus disorder prediction | 75 | 101 | - | - | |
Lele09g0547 | 295 | SUPERFAMILY | RNA-binding domain, RBD | 197 | 288 | IPR035979 | GO:0003676 | |
Lele09g0547 | 295 | Gene3D | - | 195 | 288 | IPR012677 | - | |
Lele09g0547 | 295 | Gene3D | - | 71 | 186 | IPR012677 | - | |
Lele09g0547 | 295 | FunFam | Polyadenylate-binding protein-interacting protein 10 | 201 | 279 | - | - | |
Lele09g0547 | 295 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 35 | 288 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele09g0547 | Lele-ChrLele09 | 4116722 | 4120506 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele09g0547 | 107 | 264 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 26.087 | 3.97e-11 | 61.2 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele09g0547 | 09 | 4116722 | 4120506 | Lele09g0547 | 09 | 4116722 | 4120506 | ECH | |
Lele09g0547 | 09 | 4116722 | 4120506 | Lele11g0554 | 11 | 5481605 | 5485429 | hybridization | |
Lele09g0547 | 09 | 4116722 | 4120506 | Lele12g0776 | 12 | 15825072 | 15829082 | hybridization |