Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0542 ATGAGGATTTTGGCGGAAACAAATTCCCACCTCCAAATGCTCATCCACTTCTCACATTCTTGCCAATTTTTTCACTTCGTTTCTGTTTCTATTACTCAGCTGGAGGCCTCCTCTCCATTGCTGCTTACTCTGCATGCAAACGCTCTAGAACAGTTTTGTGACTCAAGGATTCCTGAGGGACAGAATCAACAGGCTTCTGTAAAAATGGAGATTACTAATGTGAGTGAGTATGAGGCAATTGCAAAGCAGAAATTGCCAAAGATGGTGTTTGATTACTATGCATCTGGTGCTGAGGACCAGTGGACTCTTGCAGAGAACAGAAATGCCTTTTCCAGAATCCTGTTCCGGCCACGTATTCTCATCGATGTCAACAAGATAGACATGACCACCACTGTCCTGGGCTTCAAAATTTCCATGCCTATCATGATTGCTCCAACAGCCTTTCAGAAAATGGCTCATCCTGAGGGAGAATATGCAACTGCAAGAGCCGCATCAGCTGCTGGAACAATCATGACTTTGTCCTCATGGGCTACTTCAAGTGTTGAAGAAGTGGCCTCAACAGGACCTGGAATCCGCTTCTTCCAGCTATATGTGTACAAGGACAGGAATGTTGTTGCTCAGCTTGTGAGAAGAGCTGAAAGGGCTGGCTTCAAAGCCATTGCTCTCACTGTTGACACCCCAAGGCTTGGTCGCAGAGAAGCTGACATCAAGAACAGATTCAACTTGCCACCATTCTTGACATTGAAAAACTTCGAAGGTTTGGACCTCGGAAAGATGGACATGGCTGAGGACTCTGGACTTGCTAGTTATGTTGCTGGCCAAATTGATCGTACTCTGAGCTGGAAGGATGTGAAGTGGCTGCAAACAATCACTCAGCTTCCAATTCTGGTGAAGGGTGTTCTGACCGCTGAGGATACAAGGCTTGCAATTCAGGCAGGAGCAGCTGGAATTATTGTGTCCAATCATGGAGCTAGACAGCTTGATTATGTGCCTGCCACTATAATGGCTTTAGAAGAGGTTGTGAAAGCTTCTCAAGGTCGTGTTCCTGTGTTCTTGGATGGTGGTGTTCGTCGTGGAACTGATGTCTTCAAGGCCTTGGCCTTGGGAGCCTCCGGCATATTTATTGGACGTCCAGTGGTGTTCTCACTGGCATCAGAGGGAGAAGCTGGGATTAGGAAGGTGCTGCAGATGCTACGTGATGAGTTTGAGCTAACAATGGCCTTGAGCGGATGCCGCTCCCTCAAGGAAATCACTCGCGAGCATATCGTCACTGAGTGGGACCGCCCTCATCATCTTCCTCCTCTTGCCCTCCCCAGATTATGA 1323 0.4762 MRILAETNSHLQMLIHFSHSCQFFHFVSVSITQLEASSPLLLTLHANALEQFCDSRIPEGQNQQASVKMEITNVSEYEAIAKQKLPKMVFDYYASGAEDQWTLAENRNAFSRILFRPRILIDVNKIDMTTTVLGFKISMPIMIAPTAFQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFNLPPFLTLKNFEGLDLGKMDMAEDSGLASYVAGQIDRTLSWKDVKWLQTITQLPILVKGVLTAEDTRLAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKASQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLASEGEAGIRKVLQMLRDEFELTMALSGCRSLKEITREHIVTEWDRPHHLPPLALPRL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0542 440 CDD alpha_hydroxyacid_oxid_FMN 75 419 IPR012133 GO:0010181|GO:0016491
Lele09g0542 440 ProSitePatterns FMN-dependent alpha-hydroxy acid dehydrogenases active site. 320 326 IPR008259 GO:0016491
Lele09g0542 440 PANTHER S -2-HYDROXY-ACID OXIDASE-RELATED 69 429 - -
Lele09g0542 440 Gene3D Aldolase class I 68 435 IPR013785 -
Lele09g0542 440 ProSiteProfiles FMN-dependent alpha-hydroxy acid dehydrogenase domain profile. 66 427 IPR037396 -
Lele09g0542 440 SUPERFAMILY FMN-linked oxidoreductases 70 424 - -
Lele09g0542 440 PIRSF Al-hdrx_acd_dh 53 427 IPR012133 GO:0010181|GO:0016491
Lele09g0542 440 FunFam peroxisomal (S)-2-hydroxy-acid oxidase GLO1 69 434 - -
Lele09g0542 440 Pfam FMN-dependent dehydrogenase 81 423 IPR000262 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0542 Lele-ChrLele09 4047518 4052092 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0542 09 4047518 4052092 Lele10g0501 10 3549529 3553443 ECH
Lele09g0542 09 4047518 4052092 Lele09g0542 09 4047518 4052092 ECH
Lele09g0542 09 4047518 4052092 Lele11g0549 11 5399320 5403845 hybridization
Lele09g0542 09 4047518 4052092 Lele12g0778 12 15891203 15895037 hybridization