LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele09g0539	ATGGCCTTGCAATTGCACATGACTTGGCTGCCGAGTCTTCTCTCTCAGAAGCGTAAGACCGATCACCCTGTGGGCCTCAGGAACCTCGGCAACTCTTGCTACCTCAACAGCGTCCTCCAGTGTCTCACCTACACTCCTCCTCTTGCCAATTTCTGTCTTCGAAACCATCACTCTTCCCTTTGCGATTCTGCTTCGGAGGAAAGGAAGCGGGACTGTCCTTTTTGTCTACTCGAGAAACGGATTGTTCGTTCTTTGAGAGTGGATCTCGCCCAAGACGCTCCGTTGAAGATCCAGAGCTGTCTCAGGATTTTCGCCGAGCACTTTCGTTGTGGTCGTCAGGAGGATGCTCACGAGTTCTTGAGGTACGTTATCGATGCCTGCCACAACACCTGCCTTCGCCTCAAGAAGTTGAGGCGCAAGGGGGGCGATGCGGCTGTCCATGGTAACGGCAACAATACTGTGGTTAAGGATATATTTGGGGGAGCCTTGCAGAGCCAGGTGAAGTGCCTCTCTTGTGGCTATGAGTCCAATAAGGTGGATGAGATTATGGATATCAGTCTTGATGTTTTGCATAGCAATTCGCTTAAAGATGCTATGCAAAAGTTCTTTCAGCCTGAGAGTTTAGATGGGAATAATAAGTACAAATGTGACAATTGCAAGAAATTGGTGGCGGCTAAGAAACAAATGTCTATACTTGAAGCCCCTAATGTCCTCGTTATACAACTTAAGAGATTTGAGGGCATATTGGGTGGGAAGATAGATAAGGCTGTTGCATTTGAAGACATTTTTGTGCTTTCTAGCTTCATGTGCAAAGCAAGCCAGGATCCGATGCCAGAATATACGCTCTTTGGTACCATTGTCCATTCTGGATACTCCCCAGAATCTGGCCATTATTATGCTTATATAAAGGATGCAAAGGGCCGGTGGTATTGCTGTGATGATTCATCTGTCTCACTTGCTACCCTGAAAGAAGTTTTGTCAGAAAAGGTTTACATACTTTTTTTCTCTCGCACTAACCAAAGTCCAGTGCCAATTAGAAATGATTTTGCTTCAAACGGTTCAAGGTCTCATGACTCTCATCACAATAATGGAAGTCAGGCATCTGAATGTCCAAAATCTGATGCACGACCAAAAGTAGTGCATGCAAAATTGAGTTCTCAGCAATCTTCTTGGAAGGACGTGTCTGCAATGTCCAAGACTGGTAAAGAGCATTCTAGCCCACGAGTGAAGTTTAATTTTAATGGAAATTCTACTTCCAAAAGAGGCCATGAAAGTATCAATGGGAAAGTTGATGTTCCGTTGAACCAGCCTGTAGTAACTAATGGACATGTAAAAGACTCAGTTGCTTCGGAGAATGCTAAGAAAGATTCTTCATCAGTCAGGAACGGTTTTGAAAAATATAAAGCAGATGCTGTTGACAACTTAAAAAGGAAGCATTCCGTGTTAACTAATAAAAACACTGGTATTCATTCTGTTGAAAAATATCCTAGAAAGTCAGATGTTGTGGATGATTCTTGGAGAAGCAGAGCAATATCAGGTAAAGGGCCTGACAACTATAAGCTAGAAGGAAATGGTGTCAACAACAAACCTAAATCATTGGGGAATAAGAGGAAGGAACCTGTGGGTAGCAGCATTTTGCTTGCGCGTGATGATCAATCTGAAGCAAGAGTTCAGGAACTGAAAGACATGCTTAAAAAAGAGGCAAAGTTAGTCTTAAGATCATGTGGCTGGACAGATAAGGTGTATGATTATATGTCGTCTAGAAAGAGGTTACGTGCACAAGAAGCTAGAAATTCATCAAGTGAAGAAATAAAGAAGCCTCAGAATGATACTTCTGAGAAAAGACATGACTTGGAAGACCCGGAGGCATGCTTTGTTGGCGTATATATCTTGCTACCGGGCCTTGGTGTTCATAGTATGTATTACATATTGTCTTTGATGATGGTGATATTCTTACTGGGATGCTCAGTGGGGCATCGTTATATTCTGACTGTCGGGGACAGTGCTGGCTACAGCAGGAGATTGTGA	2028	0.4339	MALQLHMTWLPSLLSQKRKTDHPVGLRNLGNSCYLNSVLQCLTYTPPLANFCLRNHHSSLCDSASEERKRDCPFCLLEKRIVRSLRVDLAQDAPLKIQSCLRIFAEHFRCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGDAAVHGNGNNTVVKDIFGGALQSQVKCLSCGYESNKVDEIMDISLDVLHSNSLKDAMQKFFQPESLDGNNKYKCDNCKKLVAAKKQMSILEAPNVLVIQLKRFEGILGGKIDKAVAFEDIFVLSSFMCKASQDPMPEYTLFGTIVHSGYSPESGHYYAYIKDAKGRWYCCDDSSVSLATLKEVLSEKVYILFFSRTNQSPVPIRNDFASNGSRSHDSHHNNGSQASECPKSDARPKVVHAKLSSQQSSWKDVSAMSKTGKEHSSPRVKFNFNGNSTSKRGHESINGKVDVPLNQPVVTNGHVKDSVASENAKKDSSSVRNGFEKYKADAVDNLKRKHSVLTNKNTGIHSVEKYPRKSDVVDDSWRSRAISGKGPDNYKLEGNGVNNKPKSLGNKRKEPVGSSILLARDDQSEARVQELKDMLKKEAKLVLRSCGWTDKVYDYMSSRKRLRAQEARNSSSEEIKKPQNDTSEKRHDLEDPEACFVGVYILLPGLGVHSMYYILSLMMVIFLLGCSVGHRYILTVGDSAGYSRRL	675

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele09g0539	675	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 1.	25	40	IPR018200	GO:0004843\|GO:0006511
	Lele09g0539	675	MobiDBLite	consensus disorder prediction	382	396	-	-
	Lele09g0539	675	FunFam	Ubiquitin carboxyl-terminal hydrolase 25	18	340	-	-
	Lele09g0539	675	MobiDBLite	consensus disorder prediction	345	370	-	-
	Lele09g0539	675	MobiDBLite	consensus disorder prediction	508	543	-	-
	Lele09g0539	675	Pfam	Ubiquitin carboxyl-terminal hydrolase	24	335	IPR001394	GO:0004843\|GO:0016579
	Lele09g0539	675	SUPERFAMILY	Cysteine proteinases	17	337	IPR038765	-
	Lele09g0539	675	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	25	340	-	-
	Lele09g0539	675	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 2.	280	298	IPR018200	GO:0004843\|GO:0006511
	Lele09g0539	675	MobiDBLite	consensus disorder prediction	407	423	-	-
	Lele09g0539	675	MobiDBLite	consensus disorder prediction	593	617	-	-
	Lele09g0539	675	Gene3D	Cysteine proteinases	17	340	-	-
	Lele09g0539	675	ProSiteProfiles	Ubiquitin specific protease (USP) domain profile.	24	338	IPR028889	-
	Lele09g0539	675	CDD	Peptidase_C19E	23	336	-	-
	Lele09g0539	675	MobiDBLite	consensus disorder prediction	345	435	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele09g0539	Lele-ChrLele09	4033746	4038452	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele09g0539	23	348	Miscellaneous Gene Families	AT2G24640	37.651	4.28e-61	211

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele09g0539	09	4033746	4038452	Lele09g0539	09	4033746	4038452	ECH
	Lele09g0539	09	4033746	4038452	Lele11g0546	11	5380361	5384811	hybridization
	Lele09g0539	09	4033746	4038452	Lele12g0784	12	15907983	15912335	hybridization