Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0508 ATGGCCACTCTGCTGAATACGGTATCTCCACCTGCAAGTCTATCATCAAAAACAAAAGGGAACTGTGGTTTTAGCTTATATTCCCGGATTCTAAACATCCGTAAGATTTCCCTCAACAGGGGTTTTCCCAGAGTTTTGGCTTCTACCCAGGTGGCTGTTTCTTCCAATGATGCTGTTTTTACTCTGCCCAATTGGAGAGCAGGTAAGAGTGATCCAAAAAGTAAGGAGCTAAGGCTTAATGATGCATTTCTGTATTTAGAGTATATGGTGGGTAAAGGTCACAAACCAGATGTAGCTCAAGCAACCCAGCTTTTATATGATCTTTGCAAGGCTAATAAGCTGAGGAAAGCTGTTAGAGTGATGGAGATGATGATAGGTTCAGGTATCATACCTTATTCAGCATCCTGTACATATTTGGTCAATCATTTGTGCAACAAAGGAAATGTTGGGCATGCAATGCAATTGGTTGAGAAAATGGAGGAACATGGGTTTCTAGTTAATACTATTACCTATAACACTCTAGTTAAAGGGCTTTGCATGCAGGGAAATTTAAACAAGAGCTTGCAGCTTATAGAGAGATTAAAAAAGAAAGGATTGGTCCCAAACGCCTTCACATATTCTTTCTTGCTTGAAGCTGCTTATAAGGAAAGGGGAGTTGATGAAGCCATGAAACTTTTAGATGAGATAATCGCCAAAGGGGAGAGTAATTTGATAAGTTACAATGTTATATTAACTGGGTTGTGCAAGGAAGGTAGAACTGAAGAAGCCTTTAAGCTGTTCAGGGAATTGCCTGCAAAGGGTTTTCATCCTAGTGTTGTGAGCTATAACATTTTGCTGAGGAATTTGTGTTATGAAGGGCAATGGGACGAGGCGAATGAGCTATTAGCGGAGATGGGTGAAGAGGATCAGTCTCCCTCTGTGGTTACCTACAACATATTAATTACTTCTCTTGCCCTCCATGGAAGAATAGAACATGCTTTCAAGGTGTTGGATGAAATGACAAAGAGTGGATTTAAGGCAACTGCTACTAGCTATAATCCAATCATTGCTCATCTCTGCAAGGAAGGTAAGGTTGATCTTGTAGTTCAGTGTCTAGACCAAATGTTTTTTCGGTACTGTAGTCCTAACGAAGGAACATACAACGCTGTTGGTATGCTTTGTGAGGGAGGGAAAGTGCAGGAAGCATTCTCCATAATTCAAAGCTTGGGCAATAAACAAAACTCCCCCATGCATGATTTCTACAAAAATGTGATTTGGAGCATGTGCAGGAAAGGGAACACATATCCAGCCTTTCAAATATTATATGAACTGACAAAGTATGGATTTTCGCCAGATTCTCATACTTATTCATCTTTGGTAAGAGGAATGTGTAGGGAAGGAATGTTTGATGGAGCTATTGAGATATTCAGGATTTTGGAAGAAAATGGGCACAAGCCTGATACCGAAAATTATAACGCGCTTTTTCTTGGCCTTTGTAAATCTCATAGATTAGACTTGTCACTGGAGATATTTCAGATGATGATTGATAAAGGATGTATGCCTAATGAAACTACTTATACCATTCTCATTGAAGGGCTCGTTTCAGAAAAAGAAACAGATATAGCAGCCAAGCTTTTGAAAGAGTTGCATCAAAAGAAGGTCCTGAGCCGAAGTACTGCAGAGAGACTTGTTATGCAGTATGACCTCCAGGATTTGGCATATTAG 1704 0.3996 MATLLNTVSPPASLSSKTKGNCGFSLYSRILNIRKISLNRGFPRVLASTQVAVSSNDAVFTLPNWRAGKSDPKSKELRLNDAFLYLEYMVGKGHKPDVAQATQLLYDLCKANKLRKAVRVMEMMIGSGIIPYSASCTYLVNHLCNKGNVGHAMQLVEKMEEHGFLVNTITYNTLVKGLCMQGNLNKSLQLIERLKKKGLVPNAFTYSFLLEAAYKERGVDEAMKLLDEIIAKGESNLISYNVILTGLCKEGRTEEAFKLFRELPAKGFHPSVVSYNILLRNLCYEGQWDEANELLAEMGEEDQSPSVVTYNILITSLALHGRIEHAFKVLDEMTKSGFKATATSYNPIIAHLCKEGKVDLVVQCLDQMFFRYCSPNEGTYNAVGMLCEGGKVQEAFSIIQSLGNKQNSPMHDFYKNVIWSMCRKGNTYPAFQILYELTKYGFSPDSHTYSSLVRGMCREGMFDGAIEIFRILEENGHKPDTENYNALFLGLCKSHRLDLSLEIFQMMIDKGCMPNETTYTILIEGLVSEKETDIAAKLLKELHQKKVLSRSTAERLVMQYDLQDLAY 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0508 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Lele09g0508 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
Lele09g0508 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Lele09g0508 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Lele09g0508 567 Gene3D Tetratricopeptide repeat domain 65 232 IPR011990 GO:0005515
Lele09g0508 567 PANTHER ATPASE EXPRESSION PROTEIN 3 78 333 - -
Lele09g0508 567 Pfam PPR repeat 108 129 IPR002885 -
Lele09g0508 567 Pfam PPR repeat 135 164 IPR002885 -
Lele09g0508 567 Pfam PPR repeat family 479 527 IPR002885 -
Lele09g0508 567 Pfam PPR repeat family 236 283 IPR002885 -
Lele09g0508 567 Pfam PPR repeat family 343 382 IPR002885 -
Lele09g0508 567 Pfam PPR repeat family 167 212 IPR002885 -
Lele09g0508 567 Gene3D Tetratricopeptide repeat domain 385 564 IPR011990 GO:0005515
Lele09g0508 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Lele09g0508 567 Gene3D Tetratricopeptide repeat domain 302 372 IPR011990 GO:0005515
Lele09g0508 567 Gene3D Tetratricopeptide repeat domain 233 301 IPR011990 GO:0005515
Lele09g0508 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Lele09g0508 567 SUPERFAMILY HCP-like 82 275 - -
Lele09g0508 567 TIGRFAM PPR: pentatricopeptide repeat domain 447 481 IPR002885 -
Lele09g0508 567 TIGRFAM PPR: pentatricopeptide repeat domain 135 167 IPR002885 -
Lele09g0508 567 TIGRFAM PPR: pentatricopeptide repeat domain 273 306 IPR002885 -
Lele09g0508 567 TIGRFAM PPR: pentatricopeptide repeat domain 484 516 IPR002885 -
Lele09g0508 567 TIGRFAM PPR: pentatricopeptide repeat domain 344 376 IPR002885 -
Lele09g0508 567 TIGRFAM PPR: pentatricopeptide repeat domain 238 271 IPR002885 -
Lele09g0508 567 TIGRFAM PPR: pentatricopeptide repeat domain 308 341 IPR002885 -
Lele09g0508 567 TIGRFAM PPR: pentatricopeptide repeat domain 169 203 IPR002885 -
Lele09g0508 567 Pfam PPR repeat 441 470 IPR002885 -
Lele09g0508 567 Pfam PPR repeat 304 334 IPR002885 -
Lele09g0508 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Lele09g0508 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Lele09g0508 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Lele09g0508 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0508 Lele-ChrLele09 3764437 3766140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0508 114 547 Glycosyltransferase AT1G05670 25.968 5.56e-46 171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0508 09 3764437 3766140 Lele09g0508 09 3764437 3766140 ECH
Lele09g0508 09 3764437 3766140 Lele11g0514 11 5105602 5107308 hybridization
Lele09g0508 09 3764437 3766140 Lele12g0808 12 16130806 16134446 hybridization