Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0496 ATGGCGAAACCTGGGCGAGGCCGTCGCTCACCGCCGTCGGGTTCCATCTCGGGCTCCTCATCACGCTCTAGGTCTTCCTCTCCCTCCGATTCCCGCTCTCCCTCTCGCTCCAGATCCTTCTCCTCGTCCTCTTCTCCTTCCCGCAGTGTCAGTTCCGGGAGCCGAAGTCCACCTCCTCCAAGGAGGAAAAGTCCTGCTGAAGCAGCTAGGAGAGGTAGATCTCCTCCTCCCCAATCTAAAAGGATATCTCCACCTCCTAGGAAACCTTCTCCTGTTCGTGAATCACTTGTTCTTCACATAGATAAACTGAGCAGGAACGTCCATGAAGGCCATTTGAAAGAAATATTTAGTAACTTCGGTGAGGTTGTAAATGTGGAGTTGGCAATGGATCGAACTGTTAACCTTCCTAAAGGATATGGATATGTAGAATTCAAGACAAGAGGGGATGCTGAAAAAGCCTTACTATACATGGATGGGGCCCAGATTGATGGTAATATTGTTAAGGCCAGATTTACCTTGCCGCCAAGGCAGAAGGTTTCTCCACCCTCAAAGGCTCCTGCTCTTGCTCCAAAGAGAGATGCTCCTAGAGCTGATAATGCCAGTGCAGATGCTGAAAAAGATGGCCCAAAGAGGCAAAGAGAATCTTCTCCTAGGAGAAGACCTCCTTCACCACGAAGGAGATCTCCTGTGCCTCGAAGAGTTGGATCACCAAAGCGACTGGATTCTCCTGTTCGTCGTCGAATGGACTCACCCTATCGTCGTGGAGACACGCCTCCTAGGAGGAGGCCTGTCTCCCCCGCAAGAGGCAGATCTCCAACTCCACCAAGGCGCCTTAGATCCCCTGCAAGGGTCTCACCTAGAAGGATGCGTGGAAGTCCAATTCGCAGGCGTTCTCCTCCTCTAACGCGGCGTTCACCACCTAGACGAGTTCGTAGTCCTAGAAGGTCTCCAATCAGTCGGAGACGTAGTCGCTCTCCGCCACGGAGGTCTGCACGCTCACGCTCAAGATCATTCTCACCACCACCTCGGAGAGGACGGCCACCTATGAGACGTGGCAGATCATCATCATCCTACTCTGATTCACCAAGTCCTCACAAGGCATCCCGGAGATCAAGGAGTCGCAGTCCAAGAAGGCCTTTGAGAGGAAGAGGAAGTAGCAACAGCAGCAGCAGCAGCTCACCACCCCCAGCTCGCAGACCGTAG 1203 0.5312 MAKPGRGRRSPPSGSISGSSSRSRSSSPSDSRSPSRSRSFSSSSSPSRSVSSGSRSPPPPRRKSPAEAARRGRSPPPQSKRISPPPRKPSPVRESLVLHIDKLSRNVHEGHLKEIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRGDAEKALLYMDGAQIDGNIVKARFTLPPRQKVSPPSKAPALAPKRDAPRADNASADAEKDGPKRQRESSPRRRPPSPRRRSPVPRRVGSPKRLDSPVRRRMDSPYRRGDTPPRRRPVSPARGRSPTPPRRLRSPARVSPRRMRGSPIRRRSPPLTRRSPPRRVRSPRRSPISRRRSRSPPRRSARSRSRSFSPPPRRGRPPMRRGRSSSSYSDSPSPHKASRRSRSRSPRRPLRGRGSSNSSSSSSPPPARRP 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0496 400 MobiDBLite consensus disorder prediction 380 400 - -
Lele09g0496 400 SMART rrm1_1 97 170 IPR000504 GO:0003723
Lele09g0496 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
Lele09g0496 400 MobiDBLite consensus disorder prediction 12 57 - -
Lele09g0496 400 MobiDBLite consensus disorder prediction 301 331 - -
Lele09g0496 400 MobiDBLite consensus disorder prediction 238 263 - -
Lele09g0496 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 166 IPR000504 GO:0003723
Lele09g0496 400 MobiDBLite consensus disorder prediction 1 93 - -
Lele09g0496 400 MobiDBLite consensus disorder prediction 173 400 - -
Lele09g0496 400 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 2 254 - -
Lele09g0496 400 SUPERFAMILY RNA-binding domain, RBD 82 180 IPR035979 GO:0003676
Lele09g0496 400 Gene3D - 13 181 IPR012677 -
Lele09g0496 400 CDD RRM_RNPS1 98 170 IPR034201 -
Lele09g0496 400 FunFam Serine/arginine-rich splicing factor SR45 3 181 - -
Lele09g0496 400 MobiDBLite consensus disorder prediction 196 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0496 Lele-ChrLele09 3690850 3695307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0496 98 171 Eukaryotic Initiation Factors Gene Family AT2G23350 29.730 2.01e-07 51.2