Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0454 ATGGATCAATCGGAGCAGGCACAACAGCAGCAGCAAAAGCATGCTGTCGGAGTTGCATCTGGCCCTGGCCAGATGGCCTACTCTACTCACTACCAGACTGCTCCCATGGTAGCTTCTGGAACACCTGCCGTAGCTGTACCTTCCTCAGCACAGCCTCCTGCCACCTTCTCGAATCCCCCTCACCAAATTGCTTACCAGCAAGCACATCATTTCCACCATCAACAACAGCAGCAACAGCAACAGCTTCAGATTTTTTGGGCTAACCAAATGCAAGAAATCGAGCAAACAAGTGACTTCAAGAATCATAGTCTTCCACTTGCTAGGATAAAAAAAATAATGAAAGCTGATGAGGATGTCCGGATGATTTCAGCAGAGGCCCCGGTGATATTTGCAAAAGCATGTGAAATGTTTATCCTGGAGTTGACTCTGCGGTCATGGATTCACACGGAAGAAAACAAGAGGAGAACACTACAGAAGAATGATATAGCGGCTGCTATTTCGAGGACTGACGTATTTGATTTCTTGGTCGACATTATCCCAAGAGATGAGTTGAAAGAAGAGGGACTTGGAGTAACAAAAGCTACAATTCCAGTTGTGGGTTCCCCGGCTGATATGCCGTATTATTATGCCCCACCACAGCATCCTGTAGGACCTACGGGGATGATCATGGGAAAACCGGTTGACCAGGCAGCGCTATATGCTACCCAACAGCCTCGACCTCCTCATATGGCTTTCATGCCGTGGCCGCAAACACAACCTCCACAACAGCCGCCACCTGATGAGCAACAAACAGACACTTGA 801 0.4831 MDQSEQAQQQQQKHAVGVASGPGQMAYSTHYQTAPMVASGTPAVAVPSSAQPPATFSNPPHQIAYQQAHHFHHQQQQQQQQLQIFWANQMQEIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKATIPVVGSPADMPYYYAPPQHPVGPTGMIMGKPVDQAALYATQQPRPPHMAFMPWPQTQPPQQPPPDEQQTDT 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0454 266 MobiDBLite consensus disorder prediction 242 260 - -
Lele09g0454 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Lele09g0454 266 FunFam Nuclear transcription factor Y subunit gamma 69 181 - -
Lele09g0454 266 MobiDBLite consensus disorder prediction 1 17 - -
Lele09g0454 266 Pfam Core histone H2A/H2B/H3/H4 64 166 IPR007125 GO:0003677
Lele09g0454 266 MobiDBLite consensus disorder prediction 1 21 - -
Lele09g0454 266 SUPERFAMILY Histone-fold 64 175 IPR009072 GO:0046982
Lele09g0454 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 53 225 - -
Lele09g0454 266 MobiDBLite consensus disorder prediction 239 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0454 Lele-ChrLele09 3355000 3355800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0454 82 209 CCAAT-HAP5 Transcription Factor Family AT1G56170 92.248 5.97e-83 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele09g0454 Histone 1.4e-17 CL0012