LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele09g0428	ATGACTCTGGCTTTCGCAGTATTGAGCTTACGCTGGTCATCAATGGGATCTTGGAAGACCATCCCTCGCTCTTCACCCTTGTTTTCCATGCAGACCACCACTCCTTCCTTCGCTCGCCAGTTGAGCATGGATGCAAAGAGTGTTGCTTCTCAGCTTAATAGTTCTGGTCTGTTGCGGACTCAGGGCCTTGTTGGAGGCAAATGGAGTGATGCCTATGATGGCAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTATAGCAGATATTGCATGCATGGGTGGAAGGGAGACAAATGATGCGATATCCTCAGCCTATGACGCATTTCAATCTTGGAGCAAAACCACTGCTGCTGAGAGGAGTAAACTTCTGAGAAAATGGTATGATTTGCTAATGGCACACAAGGAAGAGCTTGCACAACTTATAACCTTAGAGCAAGGAAAGCCTCTTAAAGAATCTATTGCTGAGATAAATTATGGGGCTAGTTTTATTGAGTTTTCGGCAGAGGAGGCAAGGCGTATATATGGAGATATAATTCCTGCACCACTATCTGATCGACGGTTATTTGTTTTAAAACAGCCTGTAGGGGTTGTCGGTGCTATCACACCTTGGAACTTTCCTTTGGCTATGATTACCCGGAAGGTTGGTCCAGCCCTTGCTTGTGGCTGTACAGTGGTCGTTAAGCCCTCTGAACTTACTCCTCTCACAGCTTTGGCTTCAGCAGAGCTTGCAATTCAAGCTGGAATACCAGCGGGTGTTGTGAATGTAGTTATGGGAAATGCTCCTGAAATTGGGGATGCTATAATTGCAAGTCCACAGGTAAGAAAGATCACATTTACTGGCTCAACAGCAGTTGGAAAAAAGTTAATGGCAGGTTCTGCTGCAACAGTTAAAAAAGTATCTCTGGAACTTGGTGGCAATGCCCCTTGCATAATATTTGATGATGCTGATCTTGATGTGGCAGTAAAAGGAACTATTGCAGCAAAGTTCCGTAATAGTGGACAAACATGTGTATGTGCAAATAGAATTCTTGTGCAAGAAGGTATCTATGAGAAATTTGCAACTGCTATCCTTGATGCTGTTAAGAATATGAAAGTTGGGGACGGCTTTGGTGAAGGTGTGGTTCAGGGACCTCTAATCAATGAAGCTGCTGTTGAAAAGGTTGAATCCTTACTTCATGATGCTACCTCTAAGGGGGCAAAAATAATTCTTGGGGGTAAAAGACACAGCCTTGGATTCACTTTTTATGAACCTACAGTCGTCACTGATGTCAACAATGAGATGCGCATATCAAGAGAGGAAGTATTTGGACCAGTTGCTCCTCTTTTGAGATTTAAAACTGAGGAGGAGGCTATCAAAATTGCCAACGACACTAATGCGGGGTTGGGTTCATACATATTTACAAACAGTGTTCAACGCTCTTGGCGTGTCGCTGAGGCTCTTGAATATGGACTTGTCGGTGTAAACGAGGGAGTAATTTCAACAGAGGTTGCTCCATTTGGCGGTTTTAAACAATCTGGCCTTGGAAGAGAAGGCTCCAAATATGGAATGGATGAATTTTTGGAGATCAAATATGTTTGCTTGGGAAACATGAACAAAGACTGA	1608	0.4341	MTLAFAVLSLRWSSMGSWKTIPRSSPLFSMQTTTPSFARQLSMDAKSVASQLNSSGLLRTQGLVGGKWSDAYDGKTIKVYNPATGESIADIACMGGRETNDAISSAYDAFQSWSKTTAAERSKLLRKWYDLLMAHKEELAQLITLEQGKPLKESIAEINYGASFIEFSAEEARRIYGDIIPAPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVVKPSELTPLTALASAELAIQAGIPAGVVNVVMGNAPEIGDAIIASPQVRKITFTGSTAVGKKLMAGSAATVKKVSLELGGNAPCIIFDDADLDVAVKGTIAAKFRNSGQTCVCANRILVQEGIYEKFATAILDAVKNMKVGDGFGEGVVQGPLINEAAVEKVESLLHDATSKGAKIILGGKRHSLGFTFYEPTVVTDVNNEMRISREEVFGPVAPLLRFKTEEEAIKIANDTNAGLGSYIFTNSVQRSWRVAEALEYGLVGVNEGVISTEVAPFGGFKQSGLGREGSKYGMDEFLEIKYVCLGNMNKD	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele09g0428	535	FunFam	Aldehyde dehydrogenase, putative	499	525	-	-
	Lele09g0428	535	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	303	310	IPR029510	GO:0016491
	Lele09g0428	535	SUPERFAMILY	ALDH-like	56	533	IPR016161	GO:0016491
	Lele09g0428	535	FunFam	Succinate-semialdehyde dehydrogenase I	307	496	-	-
	Lele09g0428	535	Pfam	Aldehyde dehydrogenase family	70	527	IPR015590	GO:0016491
	Lele09g0428	535	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	331	342	IPR016160	GO:0016491
	Lele09g0428	535	PANTHER	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	54	532	-	-
	Lele09g0428	535	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	74	521	IPR016162	GO:0016491
	Lele09g0428	535	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	307	496	IPR016163	GO:0016620
	Lele09g0428	535	CDD	ALDH_F5_SSADH_GabD	79	529	-	-
	Lele09g0428	535	FunFam	Succinate-semialdehyde dehydrogenase I	74	317	-	-
	Lele09g0428	535	TIGRFAM	SSADH: succinate-semialdehyde dehydrogenase	79	525	IPR010102	GO:0009013\|GO:0009450

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele09g0428	Lele-ChrLele09	3029955	3040060	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele09g0428	36	534	Aldehyde Dehydrogenase Gene Family	AT1G79440	79.960	0.0	820