Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0405 ATGGCAGCCAGTACTACTACAACCGCCGCGCCGCCGCGTCAGCTATCCCAGAAGGAGGCTGACATTCAGATGATGTTAGCCGCGGAGGTTCACCTCGGGACCAAAAATTGTAACTTTCAAATGGAGCGTTACGTCTTCAAACGCCGTAACGACGGTATTTACATAATCAACCTTGGAAAGACTTGGGAAAAGCTTCAGCTTGCTGCTAGGGTTATTGTTGCCATAGAGAACCCTCAGGATATTATAGTTCAGTCTGCCAGGCCTTATGGTCAGAGAGCAGTTCTTAAGTTTGCTCAATACACAGGTGCTCATGCACTTGCTGGAAGGCACACTCCTGGTACATTCACTAACCAGCTCCAGACATCCTACAGTGAGCCTCGCCTTCTCATTCTAACTGATCCAAGAACAGATCATCAGCCCATAAAGGAAGCTGCACTTGGAAATATACCGACTATTGCGTTCTGTGACACTGATTCTCCCATGAGATATGTTGACATCGGTATTCCTGCCAACAACAAGGGAAAGCACAGCATAGGTTGTCTCTTTTGGCTATTGGCAAGGATGGTTCTGCAGATGAGGGGCACTATTCGTCCAGGGCTTAAATGGGATGTTATGGTGGATCTATTCTTCTACAGAGAACCTGAGGAGACCAAGCAACAAGAGGAAGATGCAGCGCCTACTGCTCCAGAATATGCTATTACAGACTTCAATGCTCCTGGCATTCCTACTGATGACCAATGGCCTGCTGCTATTGATGCACAGCCTATTGCTGCAGCTTCTGGTGTCAATTGGGCTGCTGCAGATGCTGCTGGTAATGTCATTCACTTAACTATGCAAAACGATTACACATCATGCTGAGAATGGGGTGAACCTGTGCAAGCTCCCCAAGCTCCGCAAGCTCCCGTCTCACAAATTCCTACTACCGGAATTGAGAATGTGCCTGCCACCGGCTGGGAATAA 960 0.4813 MAASTTTTAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHALAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEETKQQEEDAAPTAPEYAITDFNAPGIPTDDQWPAAIDAQPIAAASGVNWAAADAAGNVIHLTMQNDYTSCXEWGEPVQAPQAPQAPVSQIPTTGIENVPATGWE 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0405 319 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele09g0405 319 Pfam Ribosomal protein S2 123 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele09g0405 319 FunFam 40S ribosomal protein SA 21 227 - -
Lele09g0405 319 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Lele09g0405 319 TIGRFAM uS2_euk_arch: ribosomal protein uS2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lele09g0405 319 MobiDBLite consensus disorder prediction 289 319 - -
Lele09g0405 319 Gene3D - 21 227 - -
Lele09g0405 319 ProSitePatterns Ribosomal protein S2 signature 1. 22 33 IPR018130 GO:0003735|GO:0005840|GO:0006412
Lele09g0405 319 Hamap 40S ribosomal protein SA [rps-0]. 9 267 IPR027498 GO:0003735|GO:0006412|GO:0015935
Lele09g0405 319 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele09g0405 319 MobiDBLite consensus disorder prediction 297 311 - -
Lele09g0405 319 PANTHER 40S RIBOSOMAL PROTEIN SA 12 298 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lele09g0405 319 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele09g0405 319 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele09g0405 319 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele09g0405 319 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele09g0405 319 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele09g0405 319 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele09g0405 319 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0405 Lele-ChrLele09 2850507 2852812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0405 6 250 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 82.041 3.08e-149 419