Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0388 ATGTCCTCAGCCACCGCCACCGCTGCCGACACTATCGTCGTGCCAGAGACGGTGGAAGCAGAAATGAAGACGTACTGGTGTCACGAATGCGACATGAGTGTTGCTCTGTCTTCCCCTTCTTCGTCTTCAACTTCGTCGTCGACTCTTCTCTGCCCTCATTGCCACACCCACTTCCTCGAACTCATGGACTCCCCTTTCTTCCCTCAATCAGATTCTCATTCATTTCCCGCTTCGCTTTCCCTCTTCGACACCCCCTACCTCCACCACTTAACCCAGAACCACCTCCTTCCCTCGGACGACGACGACGACGGTGAGCTTTTGTACGACGACGTTTTCGAAGACCCGTTATCTCTGCTCTCCACACTACCAAATACCACCAGCAAATCTTGCACTGATTCTGTACCCACTATAATAGTTACCTCTTCCTTGCTTTCACAGCTTGACCCTGGGGGGGTTCTTTGTGCGGTTTGTAAGGACCCAATTGGGGTTGATGTGCAGGCTAAGCAGCTTCCGTGTAAGCATTTGTACCACTCCGATTGCATTACGCCGTGGCTGGAGCACCACAATTCTTGCCCGCTTTGTCGTTTTCAGCTCGTCGGTGAACAGGAGGAGGAGGATGGGGTTTCTCAGGCGAGAAGGATCAGAAGGCAGTTGAGAACAGCCATGATGAGGCTGTCTGAATTGATGGAAGAGGAGGATGATTTCTACGGGTTGAGGACCACTCTGAGTCACATTGCTAGTAGACACCTCCAATGCTAA 759 0.5191 MSSATATAADTIVVPETVEAEMKTYWCHECDMSVALSSPSSSSTSSSTLLCPHCHTHFLELMDSPFFPQSDSHSFPASLSLFDTPYLHHLTQNHLLPSDDDDDGELLYDDVFEDPLSLLSTLPNTTSKSCTDSVPTIIVTSSLLSQLDPGGVLCAVCKDPIGVDVQAKQLPCKHLYHSDCITPWLEHHNSCPLCRFQLVGEQEEEDGVSQARRIRRQLRTAMMRLSELMEEEDDFYGLRTTLSHIASRHLQC 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0388 252 ProSiteProfiles Zinc finger RING-type profile. 154 195 IPR001841 -
Lele09g0388 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 212 IPR013083 -
Lele09g0388 252 Coils Coil 211 231 - -
Lele09g0388 252 Pfam Ring finger domain 154 195 IPR001841 -
Lele09g0388 252 SUPERFAMILY RING/U-box 146 199 - -
Lele09g0388 252 SMART ring_2 154 194 IPR001841 -
Lele09g0388 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 62 198 - -
Lele09g0388 252 Pfam zinc-ribbon 24 62 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0388 Lele-ChrLele09 2696175 2697034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0388 19 251 C3H Transcription Factor Family AT3G60080 37.313 7.71e-33 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0388 09 2696175 2697034 Lele11g0379 11 3679909 3682524 hybridization
Lele09g0388 09 2696175 2697034 Lele12g0918 12 17026683 17026949 hybridization