Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0383 ATGGATCTTGATTTGAACGAGGAGCCCTTGGACCAAACCCCTACTTCAGTTATTGGATTTGATTCTATATTGGATGAGCTAGAATCAACGCATGAACATATAGAAGAGCGCATTAGGCAACTTGAAGCAGTAACCTTGAGAGCTAGGCAGCGTCAGAGGTGGCGACGGGGTCATGATTCAGTTCAAATAAATAACGTTATCACGGATATGATGATGACACCTAGTGCTCATGATGAACACAGGATGCTCCAAGAAGATGTTGGTGTCGCAGTCCCGGAAGGAACAGTTGTATTAGCGGAATTGACAACAACTAACGCTCAAAATGAAGGTAGCTTGCCTAGGGAAGAGGCTGGTGTAGACCAAGAAAGAACAGTCAACAATAGGAAAACGGGCAAAAGGAACAGTTCCCATTTAGTAGCTAAAGCATTGGGCATGGATCCATATATAGATGATGCAGTGAGCAACACTGGGAATTTTTTTGATTGTAATATCTGTCTGGACATGGCAAGGGACCCGATTTTGACATGCTGTGGTCACTTATTCTGTTGGCCATGCTTCTATCAGGTGTCATATGCTTATTCAAATGTAAGGGAGTGCCCTATTTGTAAGGGAGAGGTTGCTGAAACAGGCATTATTCCAATATATGGAAATAAAGATGAATCTAGCAACCGTCAGTTGGAATTGAAGGAAAGTGGTTTCACTATCCCTCCTAGGCCTCAAGCACGTAGAATTGAGAGTCTCAGACAACAGCTCATAAGCAGGGGAGCATCATCTTCTACAATCCATGAGATTAGGCGATTTATTGGCTCAACTGCAACTGATAGAACTCGTTTTTCAGTCAACGAACCTCACCATTCGCAGCCCCAAGCATTACATGGCACGGAGACCGGAACCAGGCAGCATAATCGTTCGCGTCTGCTTTCAAGGTTGTTAGTGGAAGGAGCTGCTTCATTTTCGTCCCTTTCGTCAGCATTAAATTCTGCAATGGATTCTGCTGAAAGATTAGTTGGAGACCTTGAAGCATACATTCGTCCCCAACAACCTCAACCCATAGGAAGCTCTAGAGAGCTGCTAGATCCTCTTTCTCGTAATAGAGATTCACCTTCTATCATTGCTGCTACAAACCAATCAGGGAGACATATTCCAGATTTTGCTGCCAATGCTTCTTTTCCTCCTTTACGTATGAATGGTGATGCAACTGCAGTAATAGATTCAGGTATCCAGACAACAGATAACGGTGTGCAAATTAGTTCAACAGAGCCTTCTTCATCATCTAGCAGAACTGTGATAGGACTTCCAGACCTTTATGATAGAGTTTCAAATGGGCGCAGAAGGAGAAGGTTAAGAAGATGA 1353 0.4353 MDLDLNEEPLDQTPTSVIGFDSILDELESTHEHIEERIRQLEAVTLRARQRQRWRRGHDSVQINNVITDMMMTPSAHDEHRMLQEDVGVAVPEGTVVLAELTTTNAQNEGSLPREEAGVDQERTVNNRKTGKRNSSHLVAKALGMDPYIDDAVSNTGNFFDCNICLDMARDPILTCCGHLFCWPCFYQVSYAYSNVRECPICKGEVAETGIIPIYGNKDESSNRQLELKESGFTIPPRPQARRIESLRQQLISRGASSSTIHEIRRFIGSTATDRTRFSVNEPHHSQPQALHGTETGTRQHNRSRLLSRLLVEGAASFSSLSSALNSAMDSAERLVGDLEAYIRPQQPQPIGSSRELLDPLSRNRDSPSIIAATNQSGRHIPDFAANASFPPLRMNGDATAVIDSGIQTTDNGVQISSTEPSSSSSRTVIGLPDLYDRVSNGRRRRRLRR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0383 450 MobiDBLite consensus disorder prediction 280 299 - -
Lele09g0383 450 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Lele09g0383 450 SUPERFAMILY RING/U-box 151 211 - -
Lele09g0383 450 Coils Coil 24 44 - -
Lele09g0383 450 MobiDBLite consensus disorder prediction 346 366 - -
Lele09g0383 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 216 IPR013083 -
Lele09g0383 450 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 128 297 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele09g0383 450 Pfam zinc-RING finger domain 162 203 IPR001841 -
Lele09g0383 450 CDD RING-HC_AtRMA_like 160 204 - -
Lele09g0383 450 SMART ring_2 162 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0383 Lele-ChrLele09 2674775 2676127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0383 116 268 C3H Transcription Factor Family AT3G58030 42.208 4.77e-33 127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0383 09 2674775 2676127 Lele11g0374 11 3662128 3663483 hybridization
Lele09g0383 09 2674775 2676127 Lele12g0922 12 17051714 17052595 hybridization