Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0349 ATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGAAGAAAAATGAAAAATTAGAGGATTCTAAACCTATTAAAATTGTTTCAGGGTCTTTGACTCCTAATCTTTCCATTAGTAAAAAGAACTCTGCAGACTTGAAGGCTAATACACAGAAAATATCCCGGGCTGTTTCCAGCGGCAAACTTGCATTCAGTTTAAAACAAAAGTCAAAGCTAGTGCCTCCACCTGTAAAGTTGAGTGGAGATGAAGAAGAAGAAACTGATGTTAGTAATGTTTCGAGTGATGCACCTCTAAAACGACAAAAGTTGGGGCTTGAAGATGGCGTTGAGCGATCATCAAGACAATCTGATGATGCACCTCCTTCCCCACGTGATCCTACAGTGAAGAAAGTTGCTGAGAAACTAGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTTACACGGCAAAAAAATCCAGGGAATACGCCTTTCAAGTTTTTATTTGACGAGAAATGTGCTGACTACAAATATTACAAATATCTACTAGCCCAAGAGGAAAAGGCTCTAGTGCAGCCTTGGGAATCACAGACATCACATAATGGAGGCGGTACAAGTTCCTCATCTTCTAGGCCAACCAATGTTCCTCTGAGATCATCTCAGCAGCATTCAACTTACCAAATTCCTGCATCTGCTCTGTATGAAAGTCCTGAAGATCGTGGATTTTATGGATCTTCAGGTCAAGCAGCATCAGGAGGAAGTGCTAATGAAGCTGGTGGATCATCAAATGCTGATTCTTTGGCATTAATGGAGTTCTACATGAAGAAAGCTGCACAGGAAGAGAAGATGAAAAAACCTAAGCAATCTAAAGATGAAATGCCCCCTCCTGCATCCCTTCAAGCTTCTTCTAAAAAAGGTCATCACATGGGTGATTACATTCCCCAAGAAGAGCTAGAGAAGTTCTTGGCTACCTGTAATGATGCAGCAGCGCAGAAAGCTGCCAAGGAGGCTGCAGAGAAGGCTAAAATTCAGGCTGATAATGTGGGTCACAAGCTTTTGTCAAAAATGGGATGGAAAGAAGGTGAGGGTCTTGGCAGCTCCAGGAGTGGTATTTCAGATCCAATCATGGCCGGTAATGTTAAGATGAACAACTTGGGGGTTGGTGCAAACAACCCTGGGGAGGTGACTTCTGAAGACGACATATACGAGCAGTACAAAAAGAGGATGATGCTCGGCTACCGTTACAGACCCAATCCTCTGAACAATCCTCGCAAGGCTTATTACTGA 1269 0.4287 MERFKQLQQEQEKKNEKLEDSKPIKIVSGSLTPNLSISKKNSADLKANTQKISRAVSSGKLAFSLKQKSKLVPPPVKLSGDEEEETDVSNVSSDAPLKRQKLGLEDGVERSSRQSDDAPPSPRDPTVKKVAEKLASFVAKNGRQFEDVTRQKNPGNTPFKFLFDEKCADYKYYKYLLAQEEKALVQPWESQTSHNGGGTSSSSSRPTNVPLRSSQQHSTYQIPASALYESPEDRGFYGSSGQAASGGSANEAGGSSNADSLALMEFYMKKAAQEEKMKKPKQSKDEMPPPASLQASSKKGHHMGDYIPQEELEKFLATCNDAAAQKAAKEAAEKAKIQADNVGHKLLSKMGWKEGEGLGSSRSGISDPIMAGNVKMNNLGVGANNPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0349 422 SMART surpneu2 128 182 IPR000061 GO:0003723|GO:0006396
Lele09g0349 422 SMART G-patch_5 337 384 IPR000467 GO:0003676
Lele09g0349 422 MobiDBLite consensus disorder prediction 186 225 - -
Lele09g0349 422 Gene3D Surp module 79 184 IPR035967 GO:0003723|GO:0006396
Lele09g0349 422 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 1 422 IPR040169 -
Lele09g0349 422 MobiDBLite consensus disorder prediction 1 23 - -
Lele09g0349 422 MobiDBLite consensus disorder prediction 99 127 - -
Lele09g0349 422 MobiDBLite consensus disorder prediction 1 25 - -
Lele09g0349 422 MobiDBLite consensus disorder prediction 272 301 - -
Lele09g0349 422 ProSiteProfiles G-patch domain profile. 339 386 IPR000467 GO:0003676
Lele09g0349 422 Pfam Surp module 130 179 IPR000061 GO:0003723|GO:0006396
Lele09g0349 422 MobiDBLite consensus disorder prediction 241 256 - -
Lele09g0349 422 SUPERFAMILY Surp module (SWAP domain) 118 182 IPR035967 GO:0003723|GO:0006396
Lele09g0349 422 Pfam G-patch domain 340 383 IPR000467 GO:0003676
Lele09g0349 422 MobiDBLite consensus disorder prediction 186 256 - -
Lele09g0349 422 Coils Coil 1 21 - -
Lele09g0349 422 ProSiteProfiles SURP motif repeat profile. 130 173 IPR000061 GO:0003723|GO:0006396
Lele09g0349 422 MobiDBLite consensus disorder prediction 71 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0349 Lele-ChrLele09 2482535 2486003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0349 328 395 C2H2 Transcription Factor Family AT5G26610 40.580 2.15e-08 53.5