Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0341 ATGATTGGTCTGTCTTTCTATTTCAGCTTGCATATTATTCTAACTTCTATACTATTATTTTCTGAATCCTCTAGGGTTCTATGCAAATTCTTTGCCCATGGAGCATGTTTGAAGGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGCTCCTCCAAACAACATATGTACGTTTTATCAGAAGGGAGTCTGTGCCTATGGTAGTCGCTGCAGATATGACCATGTCAAAGCTTCACGTGAACAGTCCTATCATCCATCTTCATCTGCAAATGTACACCCCCAAAATTCTGATTCTTCTATAGTTGGTAGTAATAGAGTTACATCAAATGGGGCTGCTACAATTCCTGAGTTGTCTTCTCGTAGTGGACCTTCCTTTCCTATTATTCTTCCTGCATGGAATGGAGAATCTGAGTTTCATGTTCCTGATTGTTTTAATGCTTCGAATCCAGAATCTGGGTATCAAGACTTTTTAGAGGATAGTGATGTCAGTGAATCCAGAATTACTGATCCTTCAGAGCGTCCTATCTGTTCATTTGCTGCTGCTGGTAATTGTCCCAGGGAGGAGAAATGCCCTTTCATTCACGGAGATTTGTGTCCTACCTGTGGAAAGCACTGTTTACATCCTTTCCGACCTGAAGAAAGAGAAGAGCATATGACGACTTGCCAGAAAAAGCAAAAGCATCTTGAGGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTCTGCCTTGAGCGTGTTCTTTCAAAGCCCACAGCAGCTGAACGCAAGTTTGGGCTGCTATCTGAATGTGATCATCCCTTCTGCATATCTTGTATTAGAAATTGGCGTAGTAGTAACCCAACCTTGGGAATGGATGTGAATACCACATTGAGGGCCTGTCCAATCTGTCGTAAGCTCTCTTACTTTGTCATTCCAAGTGTCATTTGGTACTCCACAACTGAAGAAAAACAGGAAATCATCGACAGCTACAAGGAGAAGCTCAAGTCAATTGATTGCAAGCATTTTGACTTTGGGAATGGAAACTGCCCTTTTGGTATTAGCTGTTTCTACAAGCATGCTTACCGAGATGGAAGACTTGAGCAAGCAGTTCTGAGACATCTTGGGGCTGCAGATGGCAACACTGTGATTGCTAAAGACATCAGGTTATCAGATTTCCTTGCTGATATGCATTTAAGATGA 1179 0.4182 MIGLSFYFSLHIILTSILLFSESSRVLCKFFAHGACLKGEHCEFSHDWKAPPNNICTFYQKGVCAYGSRCRYDHVKASREQSYHPSSSANVHPQNSDSSIVGSNRVTSNGAATIPELSSRSGPSFPIILPAWNGESEFHVPDCFNASNPESGYQDFLEDSDVSESRITDPSERPICSFAAAGNCPREEKCPFIHGDLCPTCGKHCLHPFRPEEREEHMTTCQKKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNTTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDSYKEKLKSIDCKHFDFGNGNCPFGISCFYKHAYRDGRLEQAVLRHLGAADGNTVIAKDIRLSDFLADMHLR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0341 392 CDD RING-HC_MKRN 239 297 - -
Lele09g0341 392 ProSiteProfiles Zinc finger C3H1-type profile. 50 77 IPR000571 GO:0046872
Lele09g0341 392 SMART c3hfinal6 171 196 IPR000571 GO:0046872
Lele09g0341 392 SMART c3hfinal6 51 76 IPR000571 GO:0046872
Lele09g0341 392 SMART c3hfinal6 326 354 IPR000571 GO:0046872
Lele09g0341 392 SMART c3hfinal6 23 48 IPR000571 GO:0046872
Lele09g0341 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 173 195 IPR000571 GO:0046872
Lele09g0341 392 ProSiteProfiles Zinc finger C3H1-type profile. 170 197 IPR000571 GO:0046872
Lele09g0341 392 SUPERFAMILY CCCH zinc finger 53 74 IPR036855 GO:0046872
Lele09g0341 392 ProSiteProfiles Zinc finger C3H1-type profile. 22 49 IPR000571 GO:0046872
Lele09g0341 392 ProSitePatterns Zinc finger RING-type signature. 263 272 IPR017907 -
Lele09g0341 392 Pfam RNA-binding, Nab2-type zinc finger 331 353 - -
Lele09g0341 392 Gene3D - 54 198 - -
Lele09g0341 392 SMART ring_2 239 296 IPR001841 -
Lele09g0341 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 302 IPR013083 -
Lele09g0341 392 Pfam CCCH-type zinc finger 55 74 IPR041367 -
Lele09g0341 392 Pfam CCCH-type zinc finger 27 47 IPR041367 -
Lele09g0341 392 SUPERFAMILY RING/U-box 228 303 - -
Lele09g0341 392 MobiDBLite consensus disorder prediction 83 105 - -
Lele09g0341 392 ProSiteProfiles Zinc finger RING-type profile. 239 297 IPR001841 -
Lele09g0341 392 PANTHER MAKORIN-RELATED 26 371 IPR045072 GO:0000209|GO:0061630
Lele09g0341 392 SUPERFAMILY CCCH zinc finger 24 47 IPR036855 GO:0046872
Lele09g0341 392 ProSiteProfiles Zinc finger C3H1-type profile. 326 355 IPR000571 GO:0046872
Lele09g0341 392 Pfam Zinc finger, C3HC4 type (RING finger) 239 296 IPR018957 GO:0046872
Lele09g0341 392 Gene3D - 18 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0341 Lele-ChrLele09 2436981 2439138 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele09g0341 zf-C3HC4 5.4e-07 CL0229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0341 09 2436981 2439138 Lele11g0339 11 3448751 3451467 hybridization
Lele09g0341 09 2436981 2439138 Lele12g0954 12 17273929 17279276 hybridization