Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0340 ATGTCTAAGAGGATTTGTAAGTTCTATGCCCGTGGAAAATGTTACAGAGGGGACCAATGTGATTATTCTCATGATGAACAGGACACTCAAGTTGATATTTGCACACTCTATCAGAAGGGATACTGCTCTCATGGTAGTCAATGTAGATATAAACATGTCAAAGCTTCTCAGGCAAGTTCTGCATCTCCATCATCTTCAGAAAATGGTCGTCAATCTCTGTCTTCAAAGACTGTCATAGATCATACAACTAGAGGAAAATCAAGGTGGATCCCCAAGAATACAAATTCTGCAAGCATCGGTCATCTTAAGCATCTGAATTCTCCAAAGAATGGTGATGTTGGTGAATCTAGTAGTGTTATACCTTCAAAGCATATCCTTTGCATGTATGCTGCAGCCAGCTGTCCCTTAGGAAAAAAATGCTTGCGGATTCATGGAGACCAGTGTCTGTATTGTAGAAAGTACTGCTTGCATCCTTCTGACCAAAGGGAGATAGAGAATCATTTGAATTCTTGTGACAAAAAGGAAAAATACAATCAGGCATTAAAAGATAGTCAAGAAATAGATTGCAATATTTGCTTGGAGCGTGTTCTTTCAAAGCCTAAAGCCTCTGAACGTAAGTTTGGGATGCTTCCTGAATGTGACCATGCTTTCTGTTTATCCTGTATCAGGAATCGGCGGAACAGTGCCTCGAACTCTGAAGTGGACATCTTTAAACTTACTAATAATAATACAGTGAGGACTTGCCCTGTGTGTCTCAAGGTATCATATTTTGTTATTCCAAGTCCTATATGGTTAATTGATTGCAAGCATTTTGACTCTGGAAATGGGAACTGTCCATTTGGAGCTAGGTGTTTCTACAAGCATACTGTGAAGCCAGGCTCAGGGATGCGGAGACATGGTAGGCCACCACCTCCTCGCCGCCCGAGAGCACAGAACAATATGGATATGTATGGAATGATAGATATGTTAAGTGAATTTGATTCACATATTGGTGGATTCCTTAACAGCTTCCGTGAATTTAATTCACCAATTGATGGATTCCGTAACAGAATAGATAGTTTTTGGAGGCGATGA 1074 0.4041 MSKRICKFYARGKCYRGDQCDYSHDEQDTQVDICTLYQKGYCSHGSQCRYKHVKASQASSASPSSSENGRQSLSSKTVIDHTTRGKSRWIPKNTNSASIGHLKHLNSPKNGDVGESSSVIPSKHILCMYAAASCPLGKKCLRIHGDQCLYCRKYCLHPSDQREIENHLNSCDKKEKYNQALKDSQEIDCNICLERVLSKPKASERKFGMLPECDHAFCLSCIRNRRNSASNSEVDIFKLTNNNTVRTCPVCLKVSYFVIPSPIWLIDCKHFDSGNGNCPFGARCFYKHTVKPGSGMRRHGRPPPPRRPRAQNNMDMYGMIDMLSEFDSHIGGFLNSFREFNSPIDGFRNRIDSFWRR 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0340 357 Pfam RNA-binding, Nab2-type zinc finger 127 145 - -
Lele09g0340 357 Pfam RNA-binding, Nab2-type zinc finger 267 288 - -
Lele09g0340 357 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
Lele09g0340 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 53 IPR000571 GO:0046872
Lele09g0340 357 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Lele09g0340 357 ProSiteProfiles Zinc finger C3H1-type profile. 267 291 IPR000571 GO:0046872
Lele09g0340 357 PANTHER MAKORIN-RELATED 1 315 IPR045072 GO:0000209|GO:0061630
Lele09g0340 357 SMART ring_2 189 251 IPR001841 -
Lele09g0340 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 259 IPR013083 -
Lele09g0340 357 Pfam CCCH-type zinc finger 4 25 IPR041367 -
Lele09g0340 357 MobiDBLite consensus disorder prediction 59 94 - -
Lele09g0340 357 SUPERFAMILY CCCH zinc finger 28 52 IPR036855 GO:0046872
Lele09g0340 357 ProSiteProfiles Zinc finger RING-type profile. 189 251 IPR001841 -
Lele09g0340 357 Gene3D - 1 68 - -
Lele09g0340 357 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Lele09g0340 357 MobiDBLite consensus disorder prediction 59 80 - -
Lele09g0340 357 Pfam zinc-RING finger domain 189 251 IPR001841 -
Lele09g0340 357 ProSitePatterns Zinc finger RING-type signature. 213 222 IPR017907 -
Lele09g0340 357 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Lele09g0340 357 SUPERFAMILY RING/U-box 180 258 - -
Lele09g0340 357 SMART c3hfinal6 263 290 IPR000571 GO:0046872
Lele09g0340 357 SMART c3hfinal6 121 146 IPR000571 GO:0046872
Lele09g0340 357 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Lele09g0340 357 SMART c3hfinal6 1 26 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0340 Lele-ChrLele09 2431661 2434680 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele09g0340 zf-RING_5 3.2e-07 CL0229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0340 09 2431661 2434680 Lele09g0340 09 2431661 2434680 ECH
Lele09g0340 09 2431661 2434680 Lele11g0338 11 3443746 3446788 hybridization
Lele09g0340 09 2431661 2434680 Lele12g0955 12 17279469 17282470 hybridization