Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele09g0340 | ATGTCTAAGAGGATTTGTAAGTTCTATGCCCGTGGAAAATGTTACAGAGGGGACCAATGTGATTATTCTCATGATGAACAGGACACTCAAGTTGATATTTGCACACTCTATCAGAAGGGATACTGCTCTCATGGTAGTCAATGTAGATATAAACATGTCAAAGCTTCTCAGGCAAGTTCTGCATCTCCATCATCTTCAGAAAATGGTCGTCAATCTCTGTCTTCAAAGACTGTCATAGATCATACAACTAGAGGAAAATCAAGGTGGATCCCCAAGAATACAAATTCTGCAAGCATCGGTCATCTTAAGCATCTGAATTCTCCAAAGAATGGTGATGTTGGTGAATCTAGTAGTGTTATACCTTCAAAGCATATCCTTTGCATGTATGCTGCAGCCAGCTGTCCCTTAGGAAAAAAATGCTTGCGGATTCATGGAGACCAGTGTCTGTATTGTAGAAAGTACTGCTTGCATCCTTCTGACCAAAGGGAGATAGAGAATCATTTGAATTCTTGTGACAAAAAGGAAAAATACAATCAGGCATTAAAAGATAGTCAAGAAATAGATTGCAATATTTGCTTGGAGCGTGTTCTTTCAAAGCCTAAAGCCTCTGAACGTAAGTTTGGGATGCTTCCTGAATGTGACCATGCTTTCTGTTTATCCTGTATCAGGAATCGGCGGAACAGTGCCTCGAACTCTGAAGTGGACATCTTTAAACTTACTAATAATAATACAGTGAGGACTTGCCCTGTGTGTCTCAAGGTATCATATTTTGTTATTCCAAGTCCTATATGGTTAATTGATTGCAAGCATTTTGACTCTGGAAATGGGAACTGTCCATTTGGAGCTAGGTGTTTCTACAAGCATACTGTGAAGCCAGGCTCAGGGATGCGGAGACATGGTAGGCCACCACCTCCTCGCCGCCCGAGAGCACAGAACAATATGGATATGTATGGAATGATAGATATGTTAAGTGAATTTGATTCACATATTGGTGGATTCCTTAACAGCTTCCGTGAATTTAATTCACCAATTGATGGATTCCGTAACAGAATAGATAGTTTTTGGAGGCGATGA | 1074 | 0.4041 | MSKRICKFYARGKCYRGDQCDYSHDEQDTQVDICTLYQKGYCSHGSQCRYKHVKASQASSASPSSSENGRQSLSSKTVIDHTTRGKSRWIPKNTNSASIGHLKHLNSPKNGDVGESSSVIPSKHILCMYAAASCPLGKKCLRIHGDQCLYCRKYCLHPSDQREIENHLNSCDKKEKYNQALKDSQEIDCNICLERVLSKPKASERKFGMLPECDHAFCLSCIRNRRNSASNSEVDIFKLTNNNTVRTCPVCLKVSYFVIPSPIWLIDCKHFDSGNGNCPFGARCFYKHTVKPGSGMRRHGRPPPPRRPRAQNNMDMYGMIDMLSEFDSHIGGFLNSFREFNSPIDGFRNRIDSFWRR | 357 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele09g0340 | 357 | Pfam | RNA-binding, Nab2-type zinc finger | 127 | 145 | - | - | |
Lele09g0340 | 357 | Pfam | RNA-binding, Nab2-type zinc finger | 267 | 288 | - | - | |
Lele09g0340 | 357 | ProSiteProfiles | Zinc finger C3H1-type profile. | 121 | 147 | IPR000571 | GO:0046872 | |
Lele09g0340 | 357 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 32 | 53 | IPR000571 | GO:0046872 | |
Lele09g0340 | 357 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1 | 27 | IPR000571 | GO:0046872 | |
Lele09g0340 | 357 | ProSiteProfiles | Zinc finger C3H1-type profile. | 267 | 291 | IPR000571 | GO:0046872 | |
Lele09g0340 | 357 | PANTHER | MAKORIN-RELATED | 1 | 315 | IPR045072 | GO:0000209|GO:0061630 | |
Lele09g0340 | 357 | SMART | ring_2 | 189 | 251 | IPR001841 | - | |
Lele09g0340 | 357 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 165 | 259 | IPR013083 | - | |
Lele09g0340 | 357 | Pfam | CCCH-type zinc finger | 4 | 25 | IPR041367 | - | |
Lele09g0340 | 357 | MobiDBLite | consensus disorder prediction | 59 | 94 | - | - | |
Lele09g0340 | 357 | SUPERFAMILY | CCCH zinc finger | 28 | 52 | IPR036855 | GO:0046872 | |
Lele09g0340 | 357 | ProSiteProfiles | Zinc finger RING-type profile. | 189 | 251 | IPR001841 | - | |
Lele09g0340 | 357 | Gene3D | - | 1 | 68 | - | - | |
Lele09g0340 | 357 | ProSiteProfiles | Zinc finger C3H1-type profile. | 28 | 55 | IPR000571 | GO:0046872 | |
Lele09g0340 | 357 | MobiDBLite | consensus disorder prediction | 59 | 80 | - | - | |
Lele09g0340 | 357 | Pfam | zinc-RING finger domain | 189 | 251 | IPR001841 | - | |
Lele09g0340 | 357 | ProSitePatterns | Zinc finger RING-type signature. | 213 | 222 | IPR017907 | - | |
Lele09g0340 | 357 | SUPERFAMILY | CCCH zinc finger | 3 | 25 | IPR036855 | GO:0046872 | |
Lele09g0340 | 357 | SUPERFAMILY | RING/U-box | 180 | 258 | - | - | |
Lele09g0340 | 357 | SMART | c3hfinal6 | 263 | 290 | IPR000571 | GO:0046872 | |
Lele09g0340 | 357 | SMART | c3hfinal6 | 121 | 146 | IPR000571 | GO:0046872 | |
Lele09g0340 | 357 | SMART | c3hfinal6 | 28 | 54 | IPR000571 | GO:0046872 | |
Lele09g0340 | 357 | SMART | c3hfinal6 | 1 | 26 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele09g0340 | Lele-ChrLele09 | 2431661 | 2434680 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Lele09g0340 | zf-RING_5 | 3.2e-07 | CL0229 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele09g0340 | 09 | 2431661 | 2434680 | Lele09g0340 | 09 | 2431661 | 2434680 | ECH | |
Lele09g0340 | 09 | 2431661 | 2434680 | Lele11g0338 | 11 | 3443746 | 3446788 | hybridization | |
Lele09g0340 | 09 | 2431661 | 2434680 | Lele12g0955 | 12 | 17279469 | 17282470 | hybridization |