Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0339 ATGACAGATCCTCACTCTAATTTCTTCTCCAAGTGCTTCAACTTCATCCCCCTCCATCCTCACTTCTACTCTTCCAATTCCTACAGCAGTTTCTCTATTCAATTCCAACCTCCTCCTTCTCTTCCTCCTCCTTCTTCCCCAAGAGAAGCCCTTCCTTTGCTGAACAATCTCAGTCTCCTCACAAACCAGACCAACAAGCAAAGAACTACTGATCATCAACAACCCTCAACCAATAAGGAACAACCATTAATTCTTCAAGACAAAGAAGCAGCTGCAGAGACTGGTAGTGATGAAACTGTGACTGTTGCTCTACGCATAGGACTTCCTTCCATGACTGCTACTAATAATACTACTAGCAGTAGCAGTAGTAATACTCAGATTAATTCAAACTCCTGCTCCTCCATTGAAACGACGACCATGGAGAAAGATGAAGTTGGTGGTGGTGGTGTCGTTTCGGGACACTACTCTTTTGATCCCTTGAACAAAGGCCAGTACTGGATCCCAACTGCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCTTGCCCCGTCTGCTCCAAAACCTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCTCAGTACAGAAAGGGACCAGATTCTCTAAGAGGAACACAACCTACGGCAATGCTAAGGCTTCCATGTTTCTGTTGTGCACCAAACTGCAAGCACAACATAGACCATCCAAGGGCAAGGCCTCTGAAGGATTTCAGAACCCTGCAAACTCATTACAAGAGGAAGCACGGCACAAAACCCTACCTGTGCAGAAAATGCAGCAAAGCTTTCGCTGTTAAAGGTGACTGGAGAACCCACGAGAAGAACTGTGGCACAATCTGGTATTGCCTTTGTGGTTCTGACTTCAAACACAAGAGATCTCTCAAAGACCACATTAGGGCTTTTGGCCATGGCCATGGCGGAGCTTTTCCTTCTGGTCTTAATGATAATTGCAGCTTGCACGAAGAAGATGAAGCAAATTCTGAGATCGAACATGATGGCGATGATATCTCAGTGGGAAGATAA 1053 0.452 MTDPHSNFFSKCFNFIPLHPHFYSSNSYSSFSIQFQPPPSLPPPSSPREALPLLNNLSLLTNQTNKQRTTDHQQPSTNKEQPLILQDKEAAAETGSDETVTVALRIGLPSMTATNNTTSSSSSNTQINSNSCSSIETTTMEKDEVGGGGVVSGHYSFDPLNKGQYWIPTASQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAPNCKHNIDHPRARPLKDFRTLQTHYKRKHGTKPYLCRKCSKAFAVKGDWRTHEKNCGTIWYCLCGSDFKHKRSLKDHIRAFGHGHGGAFPSGLNDNCSLHEEDEANSEIEHDGDDISVGR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0339 350 Gene3D Classic Zinc Finger 225 311 - -
Lele09g0339 350 Pfam Zinc finger, C2H2 type 180 199 IPR013087 -
Lele09g0339 350 SUPERFAMILY beta-beta-alpha zinc fingers 248 284 IPR036236 -
Lele09g0339 350 Gene3D Classic Zinc Finger 179 202 - -
Lele09g0339 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 284 320 IPR013087 -
Lele09g0339 350 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Lele09g0339 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Lele09g0339 350 PANTHER ZINC FINGER PROTEIN WIP2 23 341 IPR043584 GO:0003700|GO:0010468
Lele09g0339 350 SUPERFAMILY beta-beta-alpha zinc fingers 173 202 IPR036236 -
Lele09g0339 350 FunFam zinc finger protein WIP2-like 179 202 - -
Lele09g0339 350 SMART c2h2final6 264 284 IPR013087 -
Lele09g0339 350 SMART c2h2final6 180 202 IPR013087 -
Lele09g0339 350 SMART c2h2final6 290 313 IPR013087 -
Lele09g0339 350 FunFam Zinc finger protein WIP2 233 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0339 Lele-ChrLele09 2423942 2426497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0339 1 345 C2H2 Transcription Factor Family AT3G57670 51.680 4.92e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele09g0339 zf-C2H2_6 9.4e-05 CL0361