Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0273 ATGTGCAAGAAGAAGAGCTGGTTTTCTCTGATAAAGAGGCTTTTTGGATGGGACACAACACAGTCTGAACAGGGCAAGGTAAAATCTTCTCTGCTTCTTTGGGAAAATCTGTTAGTTTTATTAGATTCTGATAGTTGTGTGCTTATGGGGAAAAGAAAACTTTTTTGTTTTCTGGTTTTTGACCAGAAGGAGAAGAGAAGAGAATGGTTACATGGTAGGATGAAGGTTAAGAGATTAACTCCAATTGCTGTTCCATCAAAAGAAACCACAATGCTAGGTGGTGAAGAAGTTGAAGAACAGAGGAAGAATGCTTTATCAGTGAAAAAAAATTCTGCAGCCATCAGAATCCAATCTGCATTTAGGGGTTACCTAGCAAGGAAGGCATTGAGAGCATTGAAGGGAATAGTGAAGCTTCAAGCTATTATTAGAGGCAGAACAGTGAGACGCCAAGCTCTGAGGTCCCTCGAGTGTTTGCAGTCAATTGTTAGCATCCAGTCACAAGTCTCTGCTTCAAGGAGACTTCAATTGCTTGAAGCCAGATCTCTCTATGATAACCCCCAAACCTTCCATGGTTTAAGGGACAAGATAATAAGGATGGATTCAAACAGTGAAAAAAGATGGGATCACAGCATTTTGCTGAAGGAAGAAGTAGAGACGTCATGCATGAACAAGAAAGAAGCTCTTCTCAAAAGAGAGAGAATAAAACAGGACTTATTTAACCATCGAATGTCTGCAGAAACAGAAAGAAACAGAGTAAATGGAAGATGGAGGTACTGGCTAGAGCAATGGGTAGATACCCAACTTTCTAAGAGCAAAGAGCTTGAAGATTTAGACAGTACCTCTTTCAGCTCTCATTACAAAGGTGAAAATGATAATAATGGAGGAGGAAGATCGCTAAAACTGAGAAATCCTCAGATTCAGAGGCAAATAAATCAGATTGAAGAAGGGTTGAACTGTCACAAAATTCGGTGTTCTTCAGTGGGAAGAGAAGAAAATTACTCATCCACAAGCTCTCCTGTGATAACACCCACTTACATGGCAGCAACTGAATCAGCAAAAGCCAAAGCAAGATCCATAAGCTCCCCAAGATTAAGGGCATGGAATAATAATTTGGAGACTGATTCTGATTATAGCTATTCATCACCATGCAAGAAGAAGCTACCTCTTGTATCTTCTGTTAACGCTACTACTAGTGACGTTTTTGGTAGTACTAGGATTGGCAAGTTAAGTGGCAGTAATTATAAGCAAATTTCTCCTAGGTTAAAGGGTACAGTAGTTTCAGTGATGAATAAGCTTCAAAGAGAAGGATCTCAGATTAGTTCAGATTGTGAACTACCTTATTTTCAAGCATTCTACAAACTTTTAACTGATAACCACAGGGGATACTACTGCAAGTGGGGTGAAAGGGATAGTTCTCTTCAGTCCTAACAAGTGGGGCCCGTGGTGGAAGAGCTTCGAAAGCTCCGTAGGGTGACACCTAACCTGGTGGTTGAGTTTTGGGCAGCAGATCAGCTTCCTGAACTGATGGATTCACAGGGGAAGCCACCTAGTGAGAAGCAGTTCGAGATATTAATCAGAATGCATTCAGATGCCAATAGGGGTCTTAGGGTCTATTATATTTATGAGAAAATGAAGAAATTTGGTGTGAAACCAAGGGTTTTTTTGTATAATAGGATTATGGATGCATTAGTCAAAACAGATCACTTGGATTTGGCATTATCAGTTTGTGATGATTTTAGAGAAGATGGTTTGGTTGAAGAGTCTATTACTTTTATGATTTTGATAAAAGGATTGTGTAAGGTGGGGAGGATCGATGAAATGTTGGAGATTTTGAATCGAATGAGGACCAACCTGTGTAAGCCAGATGTATTTGAATACACTGCTATGGTTCGTGTGATGGTTTCAGAGGGCAATTTAGATGGGTGTTTGAGGGTTTGGGATGAAATGAAGAGGGATGGGGTTGAGCCTGATGTCATGGCTTATGCAACATTAATTACAGGTTTATCTAAAGGGGGCAGAACTGAAGAGGGTTATAAATTATTCAAGGAGATGAAGAAAAAGGGCCATTTGATTGATAGAGCAATATATGGAGCACTCATTGAGTCATTCTTGGCCAGGATGGAGGTTGGCTCTGCTTGTGATTTGTTGAAGGATTTGATGGCTTCAGGATATAGGGCTGATTTGGGGATATATAATTCACTTATTGAAGGTTTGTGTGGTGTGAATCAGGTTGAGAAGGCTTACAAGATTTTCCAATTTACTATACAGGAAGATATTAAACCAGACTTTGTATCTGTAAAACCCTTATTGATGTCCTATGCTGAAGCGGAACAAAAGGAAGATTTTTACCGGTTGCTCAAGCAAATGAAGAACTTGGGCTTACCAGTTCTTGATGACCTGTCCAAATTCTTTGCCTTTTTCATAGAGAAGAAGGGACCAATTGCGGCACTAGATACATTTACAGATCTGAAAGCAAAAGGTTATATTAGTGTCAAAATATACAGCATTCTTATGGATTCTCTGCAAAAGATTGGTCAGGCCAAGAAGGCATTATCGCTCTTTGATGAAATGAATGGGTCAACATGGGCATGTGAATGTCACAATAAGATCATTGAGATGTCTTCTATTCCGTCTGTTGCTGCTTACAGTTGTCTTTCCAAAGGGCTTTGCAAAATTGGAGAGATCGATGCAGCCATGATGCTTGTTCGCGACTGCTTAGCCAATGTTGATAGTGGACCGATGGAGTTTAAGTATACTCTTACCATTCTTCGTGCATACAAGTCAAATGATACAGAGAATGTAATTGAAGTATTAAATGAGATGATGCAAGAAGGTTGCCCTCCTGATGAAGTCATATACTCTGAAATCATCTCTGGCATGTGTAAGCATGGAACAATTGAAGAGGCCAGGAAGGTTTTCGCAAACTTGAGGGAGCGGAAATTATGGACCGAAGCCAATGCAATTGTGTATGATGAAATACTAATTGATCACTTGAAGGTAAAGACAGCACATTTGTTGCTGTCAGGATTGAAGTTCTTCGGTCTAGAATCTAAGTTAAAATCAAAAGGTGTCGAGTTCCTGCCAAGATGA 3090 0.3987 MCKKKSWFSLIKRLFGWDTTQSEQGKVKSSLLLWENLLVLLDSDSCVLMGKRKLFCFLVFDQKEKRREWLHGRMKVKRLTPIAVPSKETTMLGGEEVEEQRKNALSVKKNSAAIRIQSAFRGYLARKALRALKGIVKLQAIIRGRTVRRQALRSLECLQSIVSIQSQVSASRRLQLLEARSLYDNPQTFHGLRDKIIRMDSNSEKRWDHSILLKEEVETSCMNKKEALLKRERIKQDLFNHRMSAETERNRVNGRWRYWLEQWVDTQLSKSKELEDLDSTSFSSHYKGENDNNGGGRSLKLRNPQIQRQINQIEEGLNCHKIRCSSVGREENYSSTSSPVITPTYMAATESAKAKARSISSPRLRAWNNNLETDSDYSYSSPCKKKLPLVSSVNATTSDVFGSTRIGKLSGSNYKQISPRLKGTVVSVMNKLQREGSQISSDCELPYFQAFYKLLTDNHRGYYCKWGERDSSLQSXQVGPVVEELRKLRRVTPNLVVEFWAADQLPELMDSQGKPPSEKQFEILIRMHSDANRGLRVYYIYEKMKKFGVKPRVFLYNRIMDALVKTDHLDLALSVCDDFREDGLVEESITFMILIKGLCKVGRIDEMLEILNRMRTNLCKPDVFEYTAMVRVMVSEGNLDGCLRVWDEMKRDGVEPDVMAYATLITGLSKGGRTEEGYKLFKEMKKKGHLIDRAIYGALIESFLARMEVGSACDLLKDLMASGYRADLGIYNSLIEGLCGVNQVEKAYKIFQFTIQEDIKPDFVSVKPLLMSYAEAEQKEDFYRLLKQMKNLGLPVLDDLSKFFAFFIEKKGPIAALDTFTDLKAKGYISVKIYSILMDSLQKIGQAKKALSLFDEMNGSTWACECHNKIIEMSSIPSVAAYSCLSKGLCKIGEIDAAMMLVRDCLANVDSGPMEFKYTLTILRAYKSNDTENVIEVLNEMMQEGCPPDEVIYSEIISGMCKHGTIEEARKVFANLRERKLWTEANAIVYDEILIDHLKVKTAHLLLSGLKFFGLESKLKSKGVEFLPR 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0273 1029 Gene3D Tetratricopeptide repeat domain 618 706 IPR011990 GO:0005515
Lele09g0273 1029 Gene3D Tetratricopeptide repeat domain 486 617 IPR011990 GO:0005515
Lele09g0273 1029 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 727 761 IPR002885 -
Lele09g0273 1029 PANTHER ATPASE EXPRESSION PROTEIN 3 407 992 - -
Lele09g0273 1029 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 622 656 IPR002885 -
Lele09g0273 1029 MobiDBLite consensus disorder prediction 283 300 - -
Lele09g0273 1029 Gene3D Tetratricopeptide repeat domain 908 981 IPR011990 GO:0005515
Lele09g0273 1029 Gene3D Tetratricopeptide repeat domain 824 907 IPR011990 GO:0005515
Lele09g0273 1029 Pfam Protein of unknown function (DUF4005) 325 399 IPR025064 -
Lele09g0273 1029 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 657 691 IPR002885 -
Lele09g0273 1029 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 621 IPR002885 -
Lele09g0273 1029 ProSiteProfiles IQ motif profile. 133 160 IPR000048 GO:0005515
Lele09g0273 1029 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 949 983 IPR002885 -
Lele09g0273 1029 Pfam PPR repeat 833 857 IPR002885 -
Lele09g0273 1029 SMART iq_5 108 130 IPR000048 GO:0005515
Lele09g0273 1029 SMART iq_5 131 152 IPR000048 GO:0005515
Lele09g0273 1029 MobiDBLite consensus disorder prediction 281 300 - -
Lele09g0273 1029 Pfam Pentacotripeptide-repeat region of PRORP 507 620 IPR033443 -
Lele09g0273 1029 Pfam Pentacotripeptide-repeat region of PRORP 674 791 IPR033443 -
Lele09g0273 1029 Pfam PPR repeat family 621 670 IPR002885 -
Lele09g0273 1029 Gene3D Tetratricopeptide repeat domain 707 804 IPR011990 GO:0005515
Lele09g0273 1029 TIGRFAM PPR: pentatricopeptide repeat domain 730 762 IPR002885 -
Lele09g0273 1029 TIGRFAM PPR: pentatricopeptide repeat domain 589 623 IPR002885 -
Lele09g0273 1029 TIGRFAM PPR: pentatricopeptide repeat domain 626 658 IPR002885 -
Lele09g0273 1029 TIGRFAM PPR: pentatricopeptide repeat domain 660 692 IPR002885 -
Lele09g0273 1029 TIGRFAM PPR: pentatricopeptide repeat domain 833 857 IPR002885 -
Lele09g0273 1029 Pfam IQ calmodulin-binding motif 111 130 IPR000048 GO:0005515
Lele09g0273 1029 Pfam PPR repeat 945 973 IPR002885 -
Lele09g0273 1029 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
Lele09g0273 1029 Gene3D - 106 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0273 Lele-ChrLele09 1920449 1929333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0273 49 423 IQD Protein Family AT5G13460 41.958 1.57e-74 251
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0273 09 1920449 1929333 Lele11g0275 11 2914728 2917682 hybridization