Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0264 ATGGAGAAGGATGCTCGGGTTCGGTGCTCGGAGAACGAAGAGCTTGCAGCTTACTTGTTCGATAAATGGAAAGAATTGGCAGAGAAACCAAAAGGGATTTCAGAAAACATTGAAAAGACTCTGTCTAAAGCTTACTACAATGTCTGCAACTCGAAAACTCCCATTCAAACCATGAAGGACCTTTCCGAGGTCAAGGGCGTGGGAAAATGGATTTTGAAGCTCATGCAGGGATTTTTTGGTACCGGTTCTGGAAATTCTGAAGCTGAAGACCTGACCAAAAAGGGAAAGAAAAATAATGGAAGCAGACGATATATGCCTCAAAAAAATTCTGTGGCATATGCATTGTTGATAACTCTTCACAGGGGAACTTCAAATGGGAATGAGTTTATGCGTAAACAGGAACTTATTGATGCTACTGAAGCTAGTGGGTTGTCTCGAGCGGCAATTGGGCCAGAAAAAGGAAGAGGAAAGCCTGGATTTGGAAGTTCTACGAGGGATTGGTATAGTGGATGGGACTGCATGAAGACACTGATCACAAAGAGTTTAGTTGTAAAATCCAGCTGTCCAGCAAAGTACATGCTAACTGAAGAAGGTAAGGAAGCAGCACGTGAATGTCTCAGACGATCTGGAATGGAAGATTCCCAAGAGAACTCAGTTACTATAGAATGTTCTGATATGGATAAGCAGAACACTTTAGATATGGAACACAGTGATCATGGTCTGGATACTGAAGTGATATCACCACCAACCCAACAAAAGAAGATGAATGTCCCTCTTGATTTCCTAGAGAGGTTTACAAGCATGGGTTACTCCAAGGAACAAGTTGTTAGTGCATTCACTGATGTTTCAAGAAGCCACCCAGATAATGATGTTTCATCTTTGTGGCCGGATGTTTTATGTCATCGTAGAGAGGAGCAAGTATATGGTATACAGGCGGAATCTCAAACCATGAGAAATAATTTCCACGTGACAAGTTCTATCACTGTCTCAAGCGGTTCGATTGATCTCACTGGAAATGGGAGCAGATCTGTCAGTGCATCTTGTGGGAATATGCCGAGCTTTAGGTCTCCTGATACATCTTTTGCCTTGAGGGCTTGTTCATCATCTGACCATGCCATGCGAAAATCAATTGGAGAGGGGCCTAAATCAATGGTGAACGGTTTAAGTTTACCACCACTGAGCTTGGGGGAGAGGTTTGAAGATGTATATGAAGTGGTTTTAATATTGGATGATCGTGAGCAATTTGCCACTCAGGGATCACGATCTAGGAGAATTATTGAGAATATCCGCAGTCAATTCAAAATCCAAATAGATGTTCGGAGATTGCCTGTTGGAGATGGGATTTGGATAGCTCACCATAAAACTCTTGACAGTGAATATGTGCTGGATTTTATTGTTGAGAGGAAGAATGTTGATGATTTGCGTTCTTCAATCAGGGATAACCGTTATAAGGATCAAAAATTAAGACTTTTGAGGTGTGGACTGAAGAAGCTGCTATATCTTGTGGAAGGTGATCCAAATTCCTCTGAAGCTGCTGAAAGCATAAAAACTGCCTGTTTTACAACGGAGATTTTGGAGGGATTTGATGTGCAGAGAACAAGTGGTCTGGCTGATACACTAAAGAAGTATGGTTATCTTACCCAAGCAATTTCTCAATATTACAAGACAATAGTTCTGGACGACCATGTTAAGTGCTCTGGAACATGCCCTCCTTTTGATGAATTTGTCAAAAGGTGCCAAGATCTTGACAAAATGACAGTCAGTGATGTATTTGCTGTCCAGCTTATGCAGGTCCCTCAGGTTACAGAGGAGGTTGCCCTGGCTGTGCTGGATTTGTACCCCACACTCCTTTCTCTTGCCAATGCCTACTCTCTTCTTGATGGAGATGTTTGTGCACAAGAGGACATGCTCAGAAAACAGAGCAATAATGTAATCAATGCAGTTGCTAGTAGGAATATTTTCCAGTTAGTTTGGGCCGGAGAAATCAAAGGGAATACGATCAAATCGACATTACTGAAAGCATCCCACATTGATATTCGTTTTTCTATTTTGGCTTTTAATGTTAAAAGAAGAGCAAGCTATATGGAGTCTGGCTCACCTTACCAGTGGCTGAGAGAACTGAGATGGGACAATGGAGGCTGCAACCCAATCTCTGTTCTTCTTGACTGTGCAAAATGTGTAGCAACTGGAAGCATTAAGAATGCAGACATGGCTCTTGAGTTCATCTCCCACCTTGCTTCTCCTGATGGTGATGCAGTTCAGAGAATGGTAACTTATTTCAGTGAAGCCCTAGCTTACAGAATCATCAAGAACCTACCAGGTGTCTATAAGGCCCTTCATTCCTCAAAACCCTCACCAACCTCTGAACAAATCTTCGTTCAAAAATATTTCTTTGAGCTCTGTCCTTTCCTGAAACTTGCCTACTTGACCACAAACCAAGCCATTGTTGAAGCCATGGAAGGTGAAAAGCTTGTTCACATCATTGACCTTCATTCTTCTGAACCTGCACAGTGGCTTGACCTTCTCATGACTCTCAAGAAACGCCCGGAAGGCCCTCCTCATTTGAAAATCACAGGGATTCATGAGAAGAAAGAGGTTTTGGATCAAATGGGTCTTCTTTTGACCACTGAAGCTGGAAAACTTGACTTCCCTTTACAGTTTAATCCAATTGTGAGCAAGTTGGAAGATCTTGATGTAGAAAGCTTGCCTGTTAAGTCAGGAGAAGCCCTTGCCATAAGTTCAGTTCTTCAGCTTCATTCTCTTCTTGCAAGTGATGATGAAGTTTCTGCAAGAAACTCACCAGCCACACCCATGAATCTGCAAAGAGCTGTTCATCACCATCATCATCATCAGAACCACATGAACCAGAGGACTTTTGCAGAATATCTAGAGAAAGACATGATCAATGCTTATATCTCAAGCCCAGATTCAGCTTTATCACCACTTTCTCTTAGTGCTTCTCCTAAAATGGGTATGTTTCTGAATTCTCTAAGGAAACTCCAACCAAAATTGATGTTGATCACTGAGCAAGAATCAAATCTTAATGGGTCTAACCTAATGGAGAGGATAGAGAAGGCAATGTATTTCTACAGTCCATTGTTTGATTGCTTGGATTCAACTGTTTCAAGGACTTCATTGGAGAGACAGAAGCTTGAGAGTGAACTGCTTGGGGAACAGATAAAGAGGATCATTGCTTGTGAGGGTTTTGAGAGGAAAGAAAGGTATGAGAAGCTTGAGAAATGGATTCCAAGGATGGAAATGGCTGGTTTTAGGAGAGTGCCATTGAGTTACTTTGGGATGTTGCAGGCAAAGAGATTGTTGCAGAGTTATGGGTATAAGTATAAGATTAAGGAAGAGAATGATTGTCTGCTTTTGTGTTGGAGTGATAGGCCACTTTTTTCTGTATCAGCTTGGAGTTTCAGAAGATGA 3429 0.4182 MEKDARVRCSENEELAAYLFDKWKELAEKPKGISENIEKTLSKAYYNVCNSKTPIQTMKDLSEVKGVGKWILKLMQGFFGTGSGNSEAEDLTKKGKKNNGSRRYMPQKNSVAYALLITLHRGTSNGNEFMRKQELIDATEASGLSRAAIGPEKGRGKPGFGSSTRDWYSGWDCMKTLITKSLVVKSSCPAKYMLTEEGKEAARECLRRSGMEDSQENSVTIECSDMDKQNTLDMEHSDHGLDTEVISPPTQQKKMNVPLDFLERFTSMGYSKEQVVSAFTDVSRSHPDNDVSSLWPDVLCHRREEQVYGIQAESQTMRNNFHVTSSITVSSGSIDLTGNGSRSVSASCGNMPSFRSPDTSFALRACSSSDHAMRKSIGEGPKSMVNGLSLPPLSLGERFEDVYEVVLILDDREQFATQGSRSRRIIENIRSQFKIQIDVRRLPVGDGIWIAHHKTLDSEYVLDFIVERKNVDDLRSSIRDNRYKDQKLRLLRCGLKKLLYLVEGDPNSSEAAESIKTACFTTEILEGFDVQRTSGLADTLKKYGYLTQAISQYYKTIVLDDHVKCSGTCPPFDEFVKRCQDLDKMTVSDVFAVQLMQVPQVTEEVALAVLDLYPTLLSLANAYSLLDGDVCAQEDMLRKQSNNVINAVASRNIFQLVWAGEIKGNTIKSTLLKASHIDIRFSILAFNVKRRASYMESGSPYQWLRELRWDNGGCNPISVLLDCAKCVATGSIKNADMALEFISHLASPDGDAVQRMVTYFSEALAYRIIKNLPGVYKALHSSKPSPTSEQIFVQKYFFELCPFLKLAYLTTNQAIVEAMEGEKLVHIIDLHSSEPAQWLDLLMTLKKRPEGPPHLKITGIHEKKEVLDQMGLLLTTEAGKLDFPLQFNPIVSKLEDLDVESLPVKSGEALAISSVLQLHSLLASDDEVSARNSPATPMNLQRAVHHHHHHQNHMNQRTFAEYLEKDMINAYISSPDSALSPLSLSASPKMGMFLNSLRKLQPKLMLITEQESNLNGSNLMERIEKAMYFYSPLFDCLDSTVSRTSLERQKLESELLGEQIKRIIACEGFERKERYEKLEKWIPRMEMAGFRRVPLSYFGMLQAKRLLQSYGYKYKIKEENDCLLLCWSDRPLFSVSAWSFRR 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0264 1142 Pfam ERCC4 domain 410 540 IPR006166 GO:0003677|GO:0004518
Lele09g0264 1142 ProSiteProfiles GRAS family profile. 707 1139 IPR005202 -
Lele09g0264 1142 Gene3D - 96 218 IPR036388 -
Lele09g0264 1142 Gene3D - 585 661 IPR042530 -
Lele09g0264 1142 Pfam GRAS domain family 718 1138 IPR005202 -
Lele09g0264 1142 SMART ERCC4_2 406 506 IPR006166 GO:0003677|GO:0004518
Lele09g0264 1142 PANTHER CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 3 660 IPR033309 GO:0000737|GO:0006302|GO:0008821
Lele09g0264 1142 FunFam Crossover junction endonuclease MUS81 96 216 - -
Lele09g0264 1142 Gene3D - 400 549 - -
Lele09g0264 1142 SUPERFAMILY Restriction endonuclease-like 403 549 IPR011335 -
Lele09g0264 1142 FunFam Crossover junction endonuclease MUS81 585 660 - -
Lele09g0264 1142 FunFam crossover junction endonuclease MUS81 isoform X1 401 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0264 Lele-ChrLele09 1860986 1873298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0264 681 1142 GRAS Transcription Factor Family AT1G50420 52.542 5.67e-159 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele09g0264 GRAS 4.7e-122 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0264 09 1860986 1873298 Lele11g0267 11 2854377 2860773 hybridization
Lele09g0264 09 1860986 1873298 Lele12g1008 12 17686245 17692679 hybridization