Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0262 ATGAATGCAGATTCACCAAAGGAGTACCTCGGAAACATGAAAGTGGAATGCAGGGGCTTCTACCTACCTCGTCTCCTTGGAACGTGTGCTAGGTATACTGAAGTTCGTGACTTTCACAATGCAAGTGAAGCAATCGACAACATTGCTAGTGTTGCCTGCCCTGATGGTGATCCCATGCAGAGAGTAGCAAGCTACTTAAATAAGGGCCTTGCTTACAGGTTAGTGAAGAACATTCGAGGTGTTCCTGAAGCCCTTGATCTTTCAAATCCCTTGCCAAGCTTGGTGCAACAGTATGCAAGAAAGCTGTTCTTTGACTTTTGCCCGTTCTTGAAGTTTTCTTATCTCATCACCAATCAGGCTATTGTTGAAACCATGCAAAGAGAACAAGTGTTTCATATTATGGATCTTAATGCCTGTGATGCTACTCAATGGATGTATCTTATTCGTACTTTGAAGGAACAACACCAGGGAGAGCAACTACCTTTTCTGAAAATTACTGGGATTCATGAGGATAAAGATGTTTTGGAACAAATAGGGTTTCAATTGATTCAAGAAGCTCAGAGAATGAACATACTTTTCCACTTCTATCCCATTGTAAGCAAATTGGAGAATCTTTACTTTGAGAAATTGCCTTTGAAGCAAGGAGAGCCCCTTGCTATAAGTTCTGTTCTTCATCTTCATTCACTTCTGGCAGTTGATGATCAAATCAGTCCTGATTCAGTCTTGCCACCTGATCCTTTGGCTTTGCAATGCGTTTCGCCAAAGATGAAGAGGTTTCTAAGTAGCCTTTGGAAACTTCAACCGAGGTTGATGGTCATTACAGAACAAGAATCAGATAACAATGGACCTTCTCTGTCAGATAGGCTTGATAAGGCACTGAACTTCTACGCTGCACTGTTTGATTGCTTGGAGGCTACTGTTCCAAAAGCAAAAGCAGCAGAGAGAATCATGCTTGAAAAGATGCTTTTTGGGGAGGAGATAAAGAACATTGTTGCTTGTGATGGAGTTGACAGAAAAGAGAGGCACGGTAAGTTTCTGAAGACATGGCGACCATCTTTTGAATTGGCAGGTTTCATGAGGGTTCCAATGGACTATGAGAGAATGTTGCAGGTAACAAGGCCATTGCAGAGCTATGGGAATGGATACAAGTTGGTAGACTTCAATCAATGTCTGTTTACATGCTGGAATGATCTCCCATTATTTTCTGTATCAGCCTGGAGATTCTAA 1227 0.4181 MNADSPKEYLGNMKVECRGFYLPRLLGTCARYTEVRDFHNASEAIDNIASVACPDGDPMQRVASYLNKGLAYRLVKNIRGVPEALDLSNPLPSLVQQYARKLFFDFCPFLKFSYLITNQAIVETMQREQVFHIMDLNACDATQWMYLIRTLKEQHQGEQLPFLKITGIHEDKDVLEQIGFQLIQEAQRMNILFHFYPIVSKLENLYFEKLPLKQGEPLAISSVLHLHSLLAVDDQISPDSVLPPDPLALQCVSPKMKRFLSSLWKLQPRLMVITEQESDNNGPSLSDRLDKALNFYAALFDCLEATVPKAKAAERIMLEKMLFGEEIKNIVACDGVDRKERHGKFLKTWRPSFELAGFMRVPMDYERMLQVTRPLQSYGNGYKLVDFNQCLFTCWNDLPLFSVSAWRF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0262 408 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 23 403 IPR005202 -
Lele09g0262 408 Pfam GRAS domain family 24 407 IPR005202 -
Lele09g0262 408 ProSiteProfiles GRAS family profile. 13 407 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0262 Lele-ChrLele09 1850994 1853054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0262 1 407 GRAS Transcription Factor Family AT1G50420 41.242 2.54e-115 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele09g0262 GRAS 3.2e-98 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0262 09 1850994 1853054 Lele11g0265 11 2836171 2840565 hybridization
Lele09g0262 09 1850994 1853054 Lele12g1010 12 17702697 17705858 hybridization