Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0239 ATGTCTTTACATCAGCATAATCATGGTGAGATCAATGGTGTTTCAGGGTCAGGATGTTGCCTTTATGATCTTTTGTGTGCTGAAACTCCAAATTTTCAATCCCAAAAGAATCAGCGGCCGCCTTCATGTGGTCCTCTTGAAAGGTTAGAGAAGTTGATGCATGAAGCCGGGAACAAGTATTGCGCCGATTGCGGGTCTCCAGAGCCAAAATGGGTCTCTTCAAATATTGGAGCATTTATTTGCATAAAGTGTTCTGGCATACATAGAAGCCTAGGAGTCCATATATCAAAGGTTCTATCATTGAAGCTAGATCAATGGACAGATGATGAAGTTACTGCACTAACAAAGTTGGGAGGGAATATATCGGTAAATGAAAAGTATGAAACTTTCATCCCTAGTTATATAAAAAAGCCAAAGCCGACTTCTTCCATCGATGAGCGTGCTGACTTTATCAGGAGAAAATATGAGTGGCTTCAATTTATGGGGTGTGATGAACAGCTGTCCTGCCCCTTTATACCACAACAGAGCAGTTCCTCATTCATCATGTCTCCTCTAGACAAGAAAAATTGTAATAAACCAGCAACCAAACATCGTATAGGGAGTGCATTTCGTAACAGCTGGGGAAGAAAGGAACCCGATAATAATAATAATAACTCTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTGGAATTTGTTGGGTTGATAAAGGTTAATGTGGTCAAAGGCACTAACCTGGTTATCCGGGACGTAATGACTAGTGATCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAGGACACGAGTTATAAAGAACAATTTAAATCCTGTCTGGAATGAGAGCCTAATGTTGTCAATTCCACACAACATTCCTCCTCTTAAAGTGCATGTATATGACAAAGATACATTCTCAACTGATGATTTCATGGGAGGGGCCGAAATAGACATCCAACCCCTACTCATGGCTGCAAAAGCCTATGAGAAATGTGGAGCCAATGAACCCATGGAGTTTGAAAAATTGGTGGCGAGTTTGGACAACGCGCTCGTTATAGATGGCGTCATCTCTCTCGAAGACGGGAAGATCAGACAGGAAATATCTGTAAAGCTGCAGCATGTGGAGAGAGGGGAGCTGGATTTTGAGCTTGAGTGTCTTCCTCTCACTCAATAG 1173 0.4194 MSLHQHNHGEINGVSGSGCCLYDLLCAETPNFQSQKNQRPPSCGPLERLEKLMHEAGNKYCADCGSPEPKWVSSNIGAFICIKCSGIHRSLGVHISKVLSLKLDQWTDDEVTALTKLGGNISVNEKYETFIPSYIKKPKPTSSIDERADFIRRKYEWLQFMGCDEQLSCPFIPQQSSSSFIMSPLDKKNCNKPATKHRIGSAFRNSWGRKEPDNNNNNSSKKSNSLAGMVEFVGLIKVNVVKGTNLVIRDVMTSDPYVILSLGHQSVRTRVIKNNLNPVWNESLMLSIPHNIPPLKVHVYDKDTFSTDDFMGGAEIDIQPLLMAAKAYEKCGANEPMEFEKLVASLDNALVIDGVISLEDGKIRQEISVKLQHVERGELDFELECLPLTQ 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0239 390 ProSiteProfiles C2 domain profile. 217 332 IPR000008 -
Lele09g0239 390 ProSiteProfiles ARF GTPase-activating proteins domain profile. 46 168 IPR001164 GO:0005096
Lele09g0239 390 PRINTS HIV Rev interacting protein signature 58 77 IPR001164 GO:0005096
Lele09g0239 390 PRINTS HIV Rev interacting protein signature 98 119 IPR001164 GO:0005096
Lele09g0239 390 PRINTS HIV Rev interacting protein signature 77 94 IPR001164 GO:0005096
Lele09g0239 390 MobiDBLite consensus disorder prediction 201 222 - -
Lele09g0239 390 SUPERFAMILY ArfGap/RecO-like zinc finger 48 161 IPR037278 -
Lele09g0239 390 Pfam C2 domain 235 323 IPR000008 -
Lele09g0239 390 CDD C2_ArfGAP 233 377 - -
Lele09g0239 390 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 42 390 IPR044518 GO:0005096|GO:0005543
Lele09g0239 390 Gene3D C2 domain 233 390 IPR035892 -
Lele09g0239 390 Gene3D Arf GTPase activating protein 30 167 IPR038508 -
Lele09g0239 390 MobiDBLite consensus disorder prediction 208 222 - -
Lele09g0239 390 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 231 325 IPR035892 -
Lele09g0239 390 SMART C2_3c 235 330 IPR000008 -
Lele09g0239 390 CDD ArfGap 49 155 - -
Lele09g0239 390 SMART arf_gap_3 47 168 IPR001164 GO:0005096
Lele09g0239 390 FunFam stromal membrane-associated protein 1 isoform X1 32 166 - -
Lele09g0239 390 Pfam Putative GTPase activating protein for Arf 48 160 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0239 Lele-ChrLele09 1710728 1713931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0239 48 390 C2H2 Transcription Factor Family AT4G21160 48.688 9.48e-117 341