Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0234 ATGTGGAAAGAGCGGAAGCCTGATAATTCCAGGATAGTGCCGTTGAATGACTCTTGGAGATCTGGAATTTGGGAGTTATCTGACTACATTTTAACAAAAATTCTAGCTCCCCTAGGCTCAATGGACATTGCTAGGGTTTCTGCAACTTGTCATCATCTGAGATCCTTGGCTGCTTCAATAATGCCTTGTACGAAGTTAAAACTGTTTCCTCACCAGCAGACTGCTGTTGAGTGGATGTTGCATCGGGAGCGAAATGCTGAACGCTTGGCACATCCTTTATATGTTTCTTTTTCAACAGAGGATGGCTTTGTTTTCCATATAAATACTGTATCTGGTGAAATACTCATTAAGGAAGCTCCCACCATTAAAGACTTTTGTGGTGGAATGTTCTGGGATGAGCCTGGTTTGGGTAAGACTGTAACAACTCTCTCTCTTATACTGAAGACCCAGGGTACCTTGGCAGATCCACCAGATGGAGCAAAGGTGGTATGGAGTCACCACAATGGTAATCTTAAATGTGGTTATTATGATATTGTTGGTAGTTACATAATTGACAGTAGTAATTTGGGGAAGAGGGACATATGCCAGGGTGCTAGGAATAATGAGCTCCATGATCACTCCTCCAAAAGAGCTAGATCGAAGCCAAATGCTGCAAGTCGATGCTCATGGGGCTTGAGTTGCATAAAGAAAGATCTATGTGCCACTGTTGAAGAGGAAGCTGAGCATTCCAAAGAAAGAAAAGATAGCGTAAGCTCTATGAAACTAGAACACGCATCAAATGCGGAAGCACGTGTATCCGAAAATAAGCCAGATGATACTTCATATGGACATGATGATTGGGAACCTGAGTGGCAATCGACATCTAGTAGCAATGTATCTTATCTTGTCCAGAGATTGAAAGCTTTACAAGAATCCAATAAGGAGAAGGGCTACTATAATAGAAATGATCAGGTTCTTGCTGATAGCAGTTGCCCTCTGCTGATGAGAGATGTGAAATCATCATTCCAGCAATGCCCTCTAAGCACTGAGCCCAATAGTGATCTACCTGTTCCAGATTTTGGTCCATTGCCTTTAAGCAACAAGAAGAAGTCATTGACCACATTTCAGCATGATCCCGATTGTATGGCACTTGTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACCCACGTGTTTTTAATGGAACCAATCTGGGATAGAAGCATGGAGGAACAAAGTCGTGCTCATCGCATGGGTGCTTGTCGTCCCATTCTTGTGGAAACATTAGCAATGCGTGCTATCGTTTTTAAACATGACGCTGATAGAAGTAGAAGCTCCCCTAGTGAACCTGTTGTTCAATCTGATGATGGTAGAGAATTCCCAACTAAAGGTGTTATCCAATTTGAAGAATGGGGACGAGGACGTTCTTTGCATGATTTTGCAGAAAATAGTTATCTACTGAAACTTAGATTTGTGAACACCAATCCTAATGCCGTTGAAGGTAACTTGGTAGGATGGAACATGGGAGCAGTCAACATCCCTCATCTAGTTGTAGTTTCTTAG 1554 0.4234 MWKERKPDNSRIVPLNDSWRSGIWELSDYILTKILAPLGSMDIARVSATCHHLRSLAASIMPCTKLKLFPHQQTAVEWMLHRERNAERLAHPLYVSFSTEDGFVFHINTVSGEILIKEAPTIKDFCGGMFWDEPGLGKTVTTLSLILKTQGTLADPPDGAKVVWSHHNGNLKCGYYDIVGSYIIDSSNLGKRDICQGARNNELHDHSSKRARSKPNAASRCSWGLSCIKKDLCATVEEEAEHSKERKDSVSSMKLEHASNAEARVSENKPDDTSYGHDDWEPEWQSTSSSNVSYLVQRLKALQESNKEKGYYNRNDQVLADSSCPLLMRDVKSSFQQCPLSTEPNSDLPVPDFGPLPLSNKKKSLTTFQHDPDCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQSRAHRMGACRPILVETLAMRAIVFKHDADRSRSSPSEPVVQSDDGREFPTKGVIQFEEWGRGRSLHDFAENSYLLKLRFVNTNPNAVEGNLVGWNMGAVNIPHLVVVS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0234 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 149 IPR027417 -
Lele09g0234 517 MobiDBLite consensus disorder prediction 241 286 - -
Lele09g0234 517 Gene3D - 283 429 IPR027417 -
Lele09g0234 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 429 IPR027417 -
Lele09g0234 517 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 225 429 - -
Lele09g0234 517 Pfam SNF2-related domain 71 229 IPR000330 GO:0005524|GO:0140658
Lele09g0234 517 MobiDBLite consensus disorder prediction 260 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0234 Lele-ChrLele09 1678553 1682832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0234 354 432 RAD5 or RAD16-like Gene Family AT1G02670 35.366 2.04e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele09g0234 SNF2_N 1.3e-23 CL0023