Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0211 ATGGCTGAGGCAGGGGAAGTAGAAGAGAGGCCTATTTTCAGAGATGTTAGACGCTATTTCTGTGAATACTGTGGCATCTGCAGGTCCAAGAAGACCTTAATAACTGCTCATATCAATGCCCACCATAAGGAGGAGGTGGAGGAAGCCAGAATTAACAAAGATTCTGAAGTAGAGGAGGCAAAATCCAACACTTGCAAGGAATGTGGTGCTAGTTTTAAAAAGCTCGCCTATCTAATGCAGCACATGCAAAGCCATTCGATGGAGAGGCCATATGTGTGTCCTATTGAGGATTGTAAGGCAAGTTATAGAAGAAAAGATCACTTGAATCGTCATTCTCTTCAACATCAAGGTAAAACATTCAAGTGTCCATTTGAGAATTGCAGTCGCGACTTTGCTTTCCAAGGAAATATGACAAGACATGTCAAGGAATTTCATAAGGAAAACTCCACCTCTACTACTGCTGAAAATCAAAAGCAGTATGTTTGCCCAGAAGTTGGCTGTGGAAAGGTTTTCAAATTTGCATCAAAGCTGAAAAGGCATGAAGATTCTCATGTTAAGTTGGAGTCAGTAGCTGTAGTTTGCTTATATCCTGATTGTATGAAGCATTTCACAAATGAGCAATGCCTTCAAGAACATATCAAATTGTGCCACCAGTATGTGACCTGTGAGACTTGTGGGAAAAAGCAACTGAAGAAGAATATTAAGCGACACCTTCGCAAGCATGAAACTGGTAGTTCATCAGAGGGATTTAAATGCGAATATGAAGATTGTGATTGCACATTCTCAAGTAAATCTAATCTCCAGAAGCATGTGAAGGCTGTGCACTTCAAAGAGAAACCTTTCGTGTGCAGCTTTCCTGGTTGCGGCATGAGATTTTCTTACAAACATGTGAGAGATAACCATGAAAAAACTGGATCTCATGTCTATAGCCCGGGAGATTTTGAAGAAGCTGATGAGCAGTTCAGATCAAGGCCTAGAGGAGGACGAAAGAGAACGTGCCCTACTGTTGAAATGTTAGTCAGGAAAAGAGTTACTCCACCTAGTCATTTGGAACACTGGTTACTTATGCAAGAGGATGATTAG 1083 0.4118 MAEAGEVEERPIFRDVRRYFCEYCGICRSKKTLITAHINAHHKEEVEEARINKDSEVEEAKSNTCKECGASFKKLAYLMQHMQSHSMERPYVCPIEDCKASYRRKDHLNRHSLQHQGKTFKCPFENCSRDFAFQGNMTRHVKEFHKENSTSTTAENQKQYVCPEVGCGKVFKFASKLKRHEDSHVKLESVAVVCLYPDCMKHFTNEQCLQEHIKLCHQYVTCETCGKKQLKKNIKRHLRKHETGSSSEGFKCEYEDCDCTFSSKSNLQKHVKAVHFKEKPFVCSFPGCGMRFSYKHVRDNHEKTGSHVYSPGDFEEADEQFRSRPRGGRKRTCPTVEMLVRKRVTPPSHLEHWLLMQEDD 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0211 360 SUPERFAMILY beta-beta-alpha zinc fingers 118 146 IPR036236 -
Lele09g0211 360 Gene3D Classic Zinc Finger 279 304 - -
Lele09g0211 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 280 IPR013087 -
Lele09g0211 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Lele09g0211 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 120 IPR013087 -
Lele09g0211 360 SMART c2h2final6 120 145 IPR013087 -
Lele09g0211 360 SMART c2h2final6 220 241 IPR013087 -
Lele09g0211 360 SMART c2h2final6 281 307 IPR013087 -
Lele09g0211 360 SMART c2h2final6 91 115 IPR013087 -
Lele09g0211 360 SMART c2h2final6 160 184 IPR013087 -
Lele09g0211 360 SMART c2h2final6 250 275 IPR013087 -
Lele09g0211 360 SMART c2h2final6 19 41 IPR013087 -
Lele09g0211 360 SMART c2h2final6 63 85 IPR013087 -
Lele09g0211 360 SMART c2h2final6 192 217 IPR013087 -
Lele09g0211 360 Gene3D Classic Zinc Finger 118 146 - -
Lele09g0211 360 ProSitePatterns Zinc finger C2H2 type domain signature. 122 145 IPR013087 -
Lele09g0211 360 SUPERFAMILY beta-beta-alpha zinc fingers 232 288 IPR036236 -
Lele09g0211 360 Gene3D Classic Zinc Finger 147 219 - -
Lele09g0211 360 PANTHER ZINC FINGER PROTEIN 4 347 - -
Lele09g0211 360 ProSitePatterns Zinc finger C2H2 type domain signature. 283 307 IPR013087 -
Lele09g0211 360 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Lele09g0211 360 ProSitePatterns Zinc finger C2H2 type domain signature. 194 217 IPR013087 -
Lele09g0211 360 ProSitePatterns Zinc finger C2H2 type domain signature. 252 275 IPR013087 -
Lele09g0211 360 Gene3D Classic Zinc Finger 8 90 - -
Lele09g0211 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 150 IPR013087 -
Lele09g0211 360 Gene3D Classic Zinc Finger 91 117 - -
Lele09g0211 360 MobiDBLite consensus disorder prediction 305 330 - -
Lele09g0211 360 Gene3D Classic Zinc Finger 251 278 - -
Lele09g0211 360 SUPERFAMILY beta-beta-alpha zinc fingers 156 186 IPR036236 -
Lele09g0211 360 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Lele09g0211 360 SUPERFAMILY beta-beta-alpha zinc fingers 62 115 IPR036236 -
Lele09g0211 360 Coils Coil 39 63 - -
Lele09g0211 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 189 IPR013087 -
Lele09g0211 360 ProSitePatterns Zinc finger C2H2 type domain signature. 93 115 IPR013087 -
Lele09g0211 360 Pfam Zinc finger, C2H2 type 160 184 IPR013087 -
Lele09g0211 360 Pfam Zinc finger, C2H2 type 250 275 IPR013087 -
Lele09g0211 360 Pfam Zinc finger, C2H2 type 64 85 IPR013087 -
Lele09g0211 360 Pfam Zinc finger, C2H2 type 91 115 IPR013087 -
Lele09g0211 360 MobiDBLite consensus disorder prediction 305 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0211 Lele-ChrLele09 1483127 1485939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0211 87 310 C2H2 Transcription Factor Family AT1G72050 50.725 3.45e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele09g0211 zf-C2H2 0.00015 CL0361