Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0178 ATGAAGAAGAAGCTGGATACTCGTTTCCCTGCTGCTCGGATTAAAAAGATAATGCAAGCAGATGAAGATGTTGGGAAGATAGCCCTAGCAGTGCCTGTTTTAGTTTCTAAAGCTCTAGAGCTGTTTTTGCAAGACCTTTGTGATCGTACATATGAAATAACTCTTCAGAGAGGAGCAAAGACGATGAGTGCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGATTTTCTGAAGGATGTCGTCAGCAGGGTTCCTGACTATGGCCATGGGCATGGGCATAACCATTCTGAGACTGGCGCTGATGATCGGGTCATTCCAAGAAGAAGGAAAGCAGCAAATGATGATCACCATGATAGCGATGACGACTCTAAGAGAAGCAAGATGCATGAGGTTAGTCATACTGGCAATAGTGGTAGGGGAAGAGGCCGAGGTAGAGGGAGAGGCCGTGGTCGAGGGGCTCGAAATGCTGAACGGGAAAGAGAGACTCATCGTCAAGAGCTTGAAACCGAACCTTGCACTTCTGCTCTGAACAGCAGCAAACATAATCCTGATACAAATGTGGCAATTGATAATGGTTCAGAGCTGAAGGAGTTACCGAAAGAGAATAATGCAATCCCTGATGAAGGCGATCAATCTGTCTGTAACATTGATCTGAATGCCAACTTGAATGATAACGAAGACAAAAATGCTAGCACTGCGGTAACTGATGCCCCTTTGCTTGATCCTCCAAAACCTGAGACTAAGCATGAAGAAATCCCTGGCTGGTCTCTTTCTCATGTGGACAAGATGGTCATTGACTCTATGCAGCTTGCACACCTTAGTAGACCGATGGAAGAGGATGAGGAAGATTATGATGAAGAAGGTTGA 876 0.4452 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSALHLKHCVQSYNVFDFLKDVVSRVPDYGHGHGHNHSETGADDRVIPRRRKAANDDHHDSDDDSKRSKMHEVSHTGNSGRGRGRGRGRGRGRGARNAERERETHRQELETEPCTSALNSSKHNPDTNVAIDNGSELKELPKENNAIPDEGDQSVCNIDLNANLNDNEDKNASTAVTDAPLLDPPKPETKHEEIPGWSLSHVDKMVIDSMQLAHLSRPMEEDEEDYDEEG 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0178 291 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Lele09g0178 291 MobiDBLite consensus disorder prediction 91 139 - -
Lele09g0178 291 MobiDBLite consensus disorder prediction 91 214 - -
Lele09g0178 291 FunFam dr1-associated corepressor homolog 1 86 - -
Lele09g0178 291 MobiDBLite consensus disorder prediction 153 171 - -
Lele09g0178 291 SUPERFAMILY Histone-fold 3 91 IPR009072 GO:0046982
Lele09g0178 291 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 133 - -
Lele09g0178 291 MobiDBLite consensus disorder prediction 172 192 - -
Lele09g0178 291 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0178 Lele-ChrLele09 1260746 1264195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0178 1 278 CCAAT-HAP5 Transcription Factor Family AT3G12480 48.097 6.33e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele09g0178 CBFD_NFYB_HMF 2.7e-19 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0178 09 1260746 1264195 Lele11g0174 11 2243099 2246535 hybridization
Lele09g0178 09 1260746 1264195 Lele12g1081 12 18194228 18197629 hybridization