Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0164 ATGGAAGGAGGGTTAGGCCAAAACTCTGTTCCTTCATCAAGTTCTTTTGACAAGTCCGCCATTTTGGATGTTAAACCTATGCGATGCTTGCTACCAATTTTCCCAATGTCATCTCAAGGTCCTTCCACTGGTCAGTATCCTTCTGGGTTTGCTCCATTTTTCCCCTTTGGTGGACCTCAAGAATCTCATGCATGGACTGATCTCAATCAGCATGCTCCTCCCTCTGGAGGGACACCAGATGTTCCGATGCCTACGCCACTCCGTTCATTCAGAAGCCCGTTAGACTCTACTCCATCAAAACATGGAGCACTGCGTGGGAGCAGGTCAAAATCATCCCAAAGAAATACCAAGAAGAGCCAAGAATCACAAATTGATTTGAGTTCTGTAGTTGGTATTTGCCCAGCCCAACAAGCTGATGGTAACCGGGAAGTGGTTAATCTTGTGCTCATGGAGTTTGATGCGCTTCGACGAAGAATTAGCCAACTTAGAGATTCTGGGGAATATGTTTCAGGATTAACCAAGCGTGGAGATTTAAGAGCTGGCAATTTATTGATGACCGCAGGCATTCGAACAAACATGAAGAAGAGAGTAGGTGTAGTTCCTGGGGTTGAGATCGGGGACATTTTCTTTTTCAGAATAGAATTATGTGTTGTGGGGCTACATGCTCAGTCCATGGGTGGGATTGACTACATGACCATCAAGGGTGGTTTTGAGGAAGAACCTCTGGCTTTAAGCATTGTTTCATCATATGAATATGATGACCATGCAGATGATGATGATGTTTTAATTTATAGTGGACAGAGTGGGAACTTTGGCAAGAAAGAAAAGTCAGTGTCTGATCAGAAGCTTCAAGGGGGTAATCTTGCTCTAGAAAGGAGTTCACGACGGCACAATGAAGTGAGAGTCATCCGGGGAATGAAAGATGCTTTTAATCCAAGTGCAAAAATCTATGTGTATGATGGTCTGTACAAAATTCAAGATTCATGGATAGAAAAGGGGAAATGTGGCAGCGGTGTGTTCAAGTACAAGTTGGTGAGAATTCCCGGACAGCTTAGTGCTTTTTCTGTTTGGAAATCAATTGAGAAGTGGAAGACAGACTGTTCTTCAAGGACTGGACTTGTTCTTTCAGATCTCTCTTCAGGAGCTGAGAATATTCCTGTATCACTTGTCAATGAGGTTGATCATGAGAGATTGCCTGGTGGTTTCACTTATTTTCATTCCCTTAAATATCCTAAACCGTCCAGCTTAATGCAGTCTTTTAATGGATGCAACTGTACCGAACCATGTACCCCTGGTGATCTGAATTGCTCTTGTATCCGGAGAAATGAAGGCGATTTTCCATATACTGTCAATGGCGTTCTAGTGAGTCGCAAGCCATTAATTCATGAATGTGGCCCCACATGTCGTTGTTTTCCTAACTGCAAAAATCGAGTATCCCAGATGGGTCTAAAGCACCCGTTTGAAGTATTCAAAACAAGGGATAGAGGATGGGGTCTTCGATCATGGGACCCTATTCGTGCTGGTTCTTTTATTTGTGAATATGCTGGAGAAGTCATTGACAAAGGAAACTTAAATCAAAATGAGGAGTTAGCAACTAAAGATGAGTATGCTTTTAATACTAATCGTATTTATCCTCCATTTAAGTGGAATCATACTCCTCAGTTATTGGAAGAAGTGATTTCAAATGACTCTAGTGAGGATTATGATATTCCATCTCCTCTAGTTATAAGTGCTAAGGAGTTTGGAAATGTGGCTAGATTCATGAATCATGGCTGCTCCCCAAATGTTTTCTGGCAGCCTGTTTTTTATGAAGAAAACAATCAATCCTTTCTTCATATTGCATTTTTCGCTCTCAGACACATTCCTCCAATGACTGAGTTTACTTATGATTACGGGATTTCCCGTTCTGATCATACCGAGGGTAGCAGAACACCCAGAGGTAGAAACAAATGCTTATGTGGATCATCAAAGTGCCGTGGTTCTTTTGATTGA 1992 0.4207 MEGGLGQNSVPSSSSFDKSAILDVKPMRCLLPIFPMSSQGPSTGQYPSGFAPFFPFGGPQESHAWTDLNQHAPPSGGTPDVPMPTPLRSFRSPLDSTPSKHGALRGSRSKSSQRNTKKSQESQIDLSSVVGICPAQQADGNREVVNLVLMEFDALRRRISQLRDSGEYVSGLTKRGDLRAGNLLMTAGIRTNMKKRVGVVPGVEIGDIFFFRIELCVVGLHAQSMGGIDYMTIKGGFEEEPLALSIVSSYEYDDHADDDDVLIYSGQSGNFGKKEKSVSDQKLQGGNLALERSSRRHNEVRVIRGMKDAFNPSAKIYVYDGLYKIQDSWIEKGKCGSGVFKYKLVRIPGQLSAFSVWKSIEKWKTDCSSRTGLVLSDLSSGAENIPVSLVNEVDHERLPGGFTYFHSLKYPKPSSLMQSFNGCNCTEPCTPGDLNCSCIRRNEGDFPYTVNGVLVSRKPLIHECGPTCRCFPNCKNRVSQMGLKHPFEVFKTRDRGWGLRSWDPIRAGSFICEYAGEVIDKGNLNQNEELATKDEYAFNTNRIYPPFKWNHTPQLLEEVISNDSSEDYDIPSPLVISAKEFGNVARFMNHGCSPNVFWQPVFYEENNQSFLHIAFFALRHIPPMTEFTYDYGISRSDHTEGSRTPRGRNKCLCGSSKCRGSFD 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0164 663 Pfam Pre-SET motif 379 477 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele09g0164 663 Gene3D SET domain 367 662 IPR046341 -
Lele09g0164 663 ProSiteProfiles SET domain profile. 485 632 IPR001214 GO:0005515
Lele09g0164 663 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 663 IPR025794 GO:0016571
Lele09g0164 663 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 181 365 - -
Lele09g0164 663 ProSiteProfiles YDG domain profile. 198 346 IPR003105 -
Lele09g0164 663 Gene3D - 182 365 IPR036987 -
Lele09g0164 663 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 83 657 - -
Lele09g0164 663 SUPERFAMILY PUA domain-like 180 368 IPR015947 -
Lele09g0164 663 MobiDBLite consensus disorder prediction 90 110 - -
Lele09g0164 663 SMART set_7 485 638 IPR001214 GO:0005515
Lele09g0164 663 ProSiteProfiles Post-SET domain profile. 647 663 IPR003616 -
Lele09g0164 663 ProSiteProfiles Pre-SET domain profile. 421 482 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele09g0164 663 SUPERFAMILY SET domain 384 660 IPR046341 -
Lele09g0164 663 SMART G9a_1 193 350 IPR003105 -
Lele09g0164 663 MobiDBLite consensus disorder prediction 61 123 - -
Lele09g0164 663 Pfam SAD/SRA domain 197 350 IPR003105 -
Lele09g0164 663 Pfam SET domain 496 632 IPR001214 GO:0005515
Lele09g0164 663 SMART preset_2 375 469 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0164 Lele-ChrLele09 1176097 1178088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0164 1 662 Su(var)3-9 homologs AT1G73100 52.838 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele09g0164 SAD_SRA 2.9e-48 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0164 09 1176097 1178088 Lele11g0160 11 2153545 2158378 hybridization
Lele09g0164 09 1176097 1178088 Lele12g1092 12 18248267 18250252 hybridization