Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0156 ATGGGAGCCTTAAAAGCTCCAGGACCTGATGGATTAAAGGCTCTCTTTTACCAAAGTCAATGGGAGATTATCAATGCTTCAGTGATTCAAAAGGTAAAGAAAGTTTTTTCTGACCCTTCTATGATTCAATCTATTAATCATACCTTTATTGTGCTAATTCCAAAAGTAGACCATCCGGAGACAATTAGGGATTTCAGACCTATTAGTCTTTGTAATATGATCTACAAAATTGTTTCAAAAGTTGTGGTGAACAGGTTGAAGGGATATCTACCAAAGGTGATCTCACCAAACCAGTGTAGTTTTGTTCCAGGGCGAACTAGTGCTGATAATATCATTGTTGCCCAGGAGTTTGTGATGGAGTGCCTTGACGAAATTGGGCTACCGGACATGATCAAGAACACTATTCAAGCTTGTATTTCTACATCTTCCATGCAAATTCTATGGGAAGGTGATAAAGCCTCATGTTTTAATCCCACTAGGGGCCTTCGGCAGGGAGACCCCCTCTCCCCATACCTCTTTGTAATATGCATGGAGAAGTTAGCTCATATCATTCAACAGGAGATGAATACAAGGAGATGGAAACCTATAAAACTTGGTAAGCATGGCCCACCAGTATCTCACCTATTTTTTGCTGATGATTTGTTGATCTTTGCAGAAGCTAGCTTAGAACAAGTGGAAGTCATTAGAGGCTGTTTGAATCAGTTTTGCAACGACTCTGGTCAGAAAGTTAATCAAAGTAAGACCAAGATATATTTCTCTCGTAACGTTAATCATACCAGAGCATCACAAATTAGCGAGGAGCTTGGGTTTTCTCAAACAGTTAATCTTGGCAAATATTTGGGTGTACCGCTTCATCATGATAGAGTTAAGAATGAGACCTATCAGTTTGTTGTTGATAAAATCAAGAGTAGGTTGAGCAATTGGAAGATTGATAACCTTTCGTTTGCGGGACGGAGCACACTTGCAAAGTCTGTCATAAGTGCCATGCCTAATCATGTTATGCAGACAACTTATCTCCCAGATAGTACCTGCAAGCTTATCGAGAAACAAGTACGTGATTTTATGTGGGGGTCCTCAGATGAGAGAAGGCGGATGCACCTCATTTCTTGGGATAAAGTATGCACAGGGAAACAAGTTGGCGGCCTAGGAATGCGACATATCAAGCAACAAAATCGAGCTTTCATGATGAAGCTTGGTTGGGGCCTTGTAACAAAAAGGGAATCTCTTTGGGTGAAAGTTATCCGACAAAAATATGGGTGTGGAATGGATCTTATGCCTCGTATTAATATGAAGAAGCCAGGATCTAACACATGGCGAGGTATTAAGAATAACTGGCACCATACTAAAGAAGGGATACAATTGACCAGGGATCAATATGGGAATGAGTTATGTCGTTGGAAGTGGGAGAAAAGTGGGACTTTTTCTACTAGCTCAGCTTACAAGAGTTTTAATCTACCAACGGAAGCACCAATGTACAACTGGAACAAAGTTTGGAAGCTTAAGGTACCTCAAAGGTGTAAAGCTTTTGCTTGGATTATGCTTCACGAACGGGTTTTAACTAATCAGAGGAAGCTCAATCGTGGACTACACCAGAATGGGTTATGTGATCGTTGCCAACAAAGTCAGGAGGATGAAGTTCACATATTTCGAGAATGCTCTGAAACATGGAAGTTCTGGGAACGTATTATCATACCAGAAATGCACCATGCTTTTTTCTCTAGCGACTTCCAGAGTTGGGTTCAATTTAATATGAAAAAACAAGTTGGCCTCTTTGATCTAGACTGGAGAAATCTGTTTTTTATACTATGTTGGCTACTATGGAGAGCGAGGAATGAATTTTCTCATTCAAAGTTAACCACAGATTGGGATAGCCTGCTTGGGAAAGCCTTGGCAATTAGCTCGTGCATGAGGGCCACGGTGAGGAAGCTGCAAGGAACAAAAATGAACACAGGATTGCACCAAGTGACCATACCAGATGCTGAAGTCACGGCAAATAAGATTGTGGTAGAGGTTGATGGAGCTTTCTCATATTTAAATGGGCTAGCTGCATGTGGTGGCGTGTTGAAGCAGCATGATGGCGAGGTTCTTGAAGGATTCATGTTTCGTGTAGAAAATGGAGACCATCTCACAGCTGAGTTATGGGGATGTTTGCTGGGTTTGAAACGTACTTGGGACCTTGGTAGACGAGATGTGATTATCCGTTGTGATTCATCAGATGCTGTAAACCTTATTCGAGGAGACGTCAACGATATGCATGTTGAATGGGCAATTATCCGAGAAATAAAAGAGATGCGAAACTGGGATTGGGAAATTACCTTTCATGTTATAAGCAAATATCAGAATTGGATGGCAGATATCCTGGCTAAGAAGGCTCTAAATGAACCCCTGGGGCTTCAGACAGGAGGGAAGGGGGAAGCCGAGAAGATGACTACGAGGTTTAAGAAGAACAGAAAGAAGAGAGGGCACGTGAGCGCTGGCCATGGTCGTATCGGAAAGCACAGGAAGCATCCGGGAGGTCGAGGTAACGCCGGAGGTATGCACCACCACCGAATCCTCTTCGATAAATACCATCCGGGTTATTTCGGTAAGGTCGGTATGCGATACTTCCACAAGCTTCGCAACCAATTCTACTGCCCCATCGTCAACGTTGACAAGCTCTGGTCCCTCCTTCCCCAAGAAGTGAAGGATAAGGCTTCCAAGGATAACGCCCCCTTGATCGATGTCACTCAATTTGGCTTCTTCAAGGTTTTGGGCAAAGGGGTTTTGCCTGCGAATAAGCCCGTCGTCGTGAAGGCCAAGCTTGTGTCCAAGATTGCTGAGAAGAAGATCAAGGAGGCTGGAGGAGCTGTTGTCCTCACTGCTTAG 2865 0.4314 MGALKAPGPDGLKALFYQSQWEIINASVIQKVKKVFSDPSMIQSINHTFIVLIPKVDHPETIRDFRPISLCNMIYKIVSKVVVNRLKGYLPKVISPNQCSFVPGRTSADNIIVAQEFVMECLDEIGLPDMIKNTIQACISTSSMQILWEGDKASCFNPTRGLRQGDPLSPYLFVICMEKLAHIIQQEMNTRRWKPIKLGKHGPPVSHLFFADDLLIFAEASLEQVEVIRGCLNQFCNDSGQKVNQSKTKIYFSRNVNHTRASQISEELGFSQTVNLGKYLGVPLHHDRVKNETYQFVVDKIKSRLSNWKIDNLSFAGRSTLAKSVISAMPNHVMQTTYLPDSTCKLIEKQVRDFMWGSSDERRRMHLISWDKVCTGKQVGGLGMRHIKQQNRAFMMKLGWGLVTKRESLWVKVIRQKYGCGMDLMPRINMKKPGSNTWRGIKNNWHHTKEGIQLTRDQYGNELCRWKWEKSGTFSTSSAYKSFNLPTEAPMYNWNKVWKLKVPQRCKAFAWIMLHERVLTNQRKLNRGLHQNGLCDRCQQSQEDEVHIFRECSETWKFWERIIIPEMHHAFFSSDFQSWVQFNMKKQVGLFDLDWRNLFFILCWLLWRARNEFSHSKLTTDWDSLLGKALAISSCMRATVRKLQGTKMNTGLHQVTIPDAEVTANKIVVEVDGAFSYLNGLAACGGVLKQHDGEVLEGFMFRVENGDHLTAELWGCLLGLKRTWDLGRRDVIIRCDSSDAVNLIRGDVNDMHVEWAIIREIKEMRNWDWEITFHVISKYQNWMADILAKKALNEPLGLQTGGKGEAEKMTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNQFYCPIVNVDKLWSLLPQEVKDKASKDNAPLIDVTQFGFFKVLGKGVLPANKPVVVKAKLVSKIAEKKIKEAGGAVVLTA 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0156 954 MobiDBLite consensus disorder prediction 813 842 - -
Lele09g0156 954 ProSitePatterns Ribosomal protein L15 signature. 915 947 IPR001196 GO:0003735|GO:0005840|GO:0006412
Lele09g0156 954 CDD RT_nLTR_like 47 284 - -
Lele09g0156 954 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 837 951 IPR021131 -
Lele09g0156 954 SUPERFAMILY Ribonuclease H-like 666 796 IPR012337 -
Lele09g0156 954 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 34 284 IPR000477 -
Lele09g0156 954 MobiDBLite consensus disorder prediction 802 842 - -
Lele09g0156 954 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 1 767 - -
Lele09g0156 954 SUPERFAMILY Ribosomal proteins L15p and L18e 814 953 IPR036227 -
Lele09g0156 954 SUPERFAMILY DNA/RNA polymerases 5 306 IPR043502 -
Lele09g0156 954 CDD RNase_H_like 671 789 IPR044730 -
Lele09g0156 954 Pfam Reverse transcriptase-like 671 791 IPR002156 GO:0003676|GO:0004523
Lele09g0156 954 FunFam 60S ribosomal protein L27a 866 954 - -
Lele09g0156 954 Hamap 50S ribosomal protein L15 [rplO]. 809 953 IPR030878 GO:0003735|GO:0006412|GO:0015934
Lele09g0156 954 Pfam zinc-binding in reverse transcriptase 474 559 IPR026960 -
Lele09g0156 954 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 114 283 IPR000477 -
Lele09g0156 954 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 53 113 IPR000477 -
Lele09g0156 954 Gene3D - 664 795 IPR036397 GO:0003676
Lele09g0156 954 Gene3D - 866 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0156 Lele-ChrLele09 1082498 1085899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0156 809 954 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 89.041 4.87e-88 276