Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0107 ATGAGTGTTGTCTATCTTTCACTGTCATTTAGTGTCACTCTTATAAATAAATGGAAAATCTATCAGGCTATGCTTTCACTGGTTGTCGTCATCTTTACCCTTCTTAGGTTTGCGATATTGTTCCTCAATGTGCTTGGCCATGACCATGGCAGTGTCGGCAAGCTTCCTGATATTTGGAACTTTATAGTTCTGAGCCAAGTAAACCCCAGTAAGGGTCCCTGCTATGAAAGAGAAGGAACTCCTGATTATACCCATCGTCTGATGCACTCAAATGACTTCACCAATTCATTCAAAATGAAACAATCAAATGAGCAGGGAGAAAAGAAGGAAGGAACCACTAAAGGTCGGTTTTGGCATTCTTGTCGGAGATCGGTGCTGGTTGAGAGGCTGAAAGCATCACTAATGTCCTCCAGGTTTATAGCAATTTCGGCTGTTTTTACAGCTTTGAGCTTTGTGGGTGTACAATTTGGCTCGGAGTTGTCATTCAGTAAACTGAAATCAGAAGGAATTATCGGCAAGAATTTAATTCACCTGGATAAGGAGAATACCAATCATGCCATTGAGTCGTTTTTGGGGTCGTACACCACCATATGGTTACTTGCAAATTTTGTGATCAATGCATTTATCCTTCTCAATCTTTGTCTCAAGACTATATTTTTCTCCGAGTTGTATCCTACTGAAATTCGGAAGCTGGTTGAGTGTCTCATTAATTATGTCATCTACAAGGGGACATTTCTACCAATGATAGTGCCTGCATCAATATATGAGGCAGGTCTATGGTCTTGTTGGTTGATAGTGCTATGTTCTTTAAAGATGTTTCAAACTTTGGCCAGAGATCGTTTAGAGCGACTGAATGCATCTCCATCTGCCAGACCCTGGACTTATGGCCGTGTATATTCAGCATTATTGTTGGTTTTCTTGGTTGATTTATTTTGGATAAGGCTATGTCTGATGATATATAAAACACACCCATCCTCTATGCTTCTGTTGCTATTCTATGAGCCTCTCAGTATTGCTTGTGAGACCCTGCAGGCTATTTTGGTACATGGGTTTCAATTGCTTGATATATGGCTTCATCATTCAGCATGCAATAACACCGATAGTGGAAGGTCAAAACTGTTTGACACATTAGCAGCAGGATCGTTAATGGAATGGAAGTGGAGTCTCATTCGGAATTTTGGATTTTTACTAGACATTGCAACTTCTTTTACAGAACTTGGCCATTACTTGCATATTTGGTGGCTTCATGGCATAGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAACATACGAACGCTGCTAAGTGCTCTTATAAATCGCATAAGAGCATATATCAGGTTAAGGACAGCTTTAGGTGCACTACATGCTGCTCTTCCTGATGCAACTACTGAGGAGCTACTATCATATGATGATGAATGTGCTATTTGTAGGGAGCCCATGGCCAAGGCAAAAAAGTTAAACTGCAAACACCTTTTCCATCTTGCGTGTTTGAGATCTTGGTTAGATCAAGGATTGACAGAGATTTATACTTGTCCAACATGTCGGAAGCCACTCTTTGTTGGCCGGTCTCAAAATGAAGCAAGCTTCAATATGCCGGAAACATCAAGTGAAGAACCACATGCACACCAAATAGGTTCAGGGCTTGATCAGCCAAACACTAGTAGACATGCCATGGCTGCTGGATTATTTCCCAACCAGACATCAAATATGGAAGGCATTTCTTGGAGGGGTGCAGCTGGACTGGACTCACCTTGGTTGCATTCTTGGCCAAATCAAGGGGTTGATGGGGCTGGTCCATCTACTGCAATGAGATCAGTTGGATTAGGAAGGGTTCAAATGATGATGAGACATCTTGCATCTGTTGGAGAAAATGCTCAGAATGCCCTTGAAGATACTGCTTGGAACCTTTGGCCTATGAATCCTTCTCAGGCTTCTCCAAGTGGTTCACGGATTCCTCCTCCTCATGGGAGGTTCCCTGGAGGCTCTGATAATCTACATATGAGGAATGCCTCACGTTTTGTAAATGATAATCTGGCAAATATGCTGGCTATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATACCAGATGACATAATTTTCCAGGACTTGCAGCGGACAAATTCTGTTTCAGTTACAGTGAATAATCTTCTCCAAATGCAACGATTAGTTCTTGCCACCCTCTCAGGTACTTCGATTATTATCGAGGATATTCGTGCAGACGAGACTTTCCCGGGTCTTCAGAAACACGAGGTCTCTTTTCTTCGTTTGCTTGAGAAAGTCTGCGATGGTTGCTATCTCGAAATCAACGAACCTGCTACTAAATTGAAGTACAAGCCTGGAATTGTCATGGGTGGGAAGAATCTTGCGCATGACTGTGGTGTTAGTCGTTCCATTGGTTATTTCTTGGAACCGCTGCTCCTCCTTGCTTTATTTGGAAAGAAGGCCCTCGAGATTAGACTCAAAGGAATTACAAATGATTCTAAGGATCCATCAGTTGATACTTTCCGCTCTACCACTCTAAACATATTGAAACGATTTGGGGTCCCTTCTGAACGATTGGAACTTAAAATAGAGTCTCGTGGAGTTCCTCCGGATGGTGGTGGGGAAGTTGTTTTGTCCGTGCCTATTGTTCAGAGTCTTTCTGCAGTTTCCTGGACTGACGAGGGCATGGTTAAGAGGATTAGAGGAGTTACATTTTCTGCTAGAGTGTCTTCTCAGTTTGAAAAGAGCATGATTCATGCTGCCCGTGGAATCTTCAATCGTCTACTTCCAGATGTACACATTTTTACGGATCACAAAGCTGGCCCACAGGCTGGAAAGTCACCTGGATATGGGATTTCACTTGTTGCGGAAACTATTTCTGGTTGCTTCATTTCTGTCGATACTGCTGTTTCTCGTGATCATGCTGAAGAAGCTTCTGACTTCACAAATGATGAAAAGAAAGACCTGATACCCCCAGAAGACATTGGTCATCAAACTGCTTATGCTTTACTTCAGGAGATCCAGCAGGGTGGAGTAGTGGATTCAACGCATCAGGGCCTGTTGTTTCTTCTCTGCGCACTATGTTTACAAGATGTTTCGAAGATTCGCGTTGGACAGCTATCCCAGCATGGGATAGAAACACTGAGGAACATAAGTGAGTTTTTAGATTTGAAGTTCGTTATAAAGCCAGATCCAAAGACTCACACGGTAATTCTTAAATGTATCGGTTCTGGCTTGAGGAACCTTTCTAGAAAGCTGTCTTGA 3252 0.4253 MSVVYLSLSFSVTLINKWKIYQAMLSLVVVIFTLLRFAILFLNVLGHDHGSVGKLPDIWNFIVLSQVNPSKGPCYEREGTPDYTHRLMHSNDFTNSFKMKQSNEQGEKKEGTTKGRFWHSCRRSVLVERLKASLMSSRFIAISAVFTALSFVGVQFGSELSFSKLKSEGIIGKNLIHLDKENTNHAIESFLGSYTTIWLLANFVINAFILLNLCLKTIFFSELYPTEIRKLVECLINYVIYKGTFLPMIVPASIYEAGLWSCWLIVLCSLKMFQTLARDRLERLNASPSARPWTYGRVYSALLLVFLVDLFWIRLCLMIYKTHPSSMLLLLFYEPLSIACETLQAILVHGFQLLDIWLHHSACNNTDSGRSKLFDTLAAGSLMEWKWSLIRNFGFLLDIATSFTELGHYLHIWWLHGIAFHLVDAVLFLNIRTLLSALINRIRAYIRLRTALGALHAALPDATTEELLSYDDECAICREPMAKAKKLNCKHLFHLACLRSWLDQGLTEIYTCPTCRKPLFVGRSQNEASFNMPETSSEEPHAHQIGSGLDQPNTSRHAMAAGLFPNQTSNMEGISWRGAAGLDSPWLHSWPNQGVDGAGPSTAMRSVGLGRVQMMMRHLASVGENAQNALEDTAWNLWPMNPSQASPSGSRIPPPHGRFPGGSDNLHMRNASRFVNDNLANMLAMAETVREVLPHIPDDIIFQDLQRTNSVSVTVNNLLQMQRLVLATLSGTSIIIEDIRADETFPGLQKHEVSFLRLLEKVCDGCYLEINEPATKLKYKPGIVMGGKNLAHDCGVSRSIGYFLEPLLLLALFGKKALEIRLKGITNDSKDPSVDTFRSTTLNILKRFGVPSERLELKIESRGVPPDGGGEVVLSVPIVQSLSAVSWTDEGMVKRIRGVTFSARVSSQFEKSMIHAARGIFNRLLPDVHIFTDHKAGPQAGKSPGYGISLVAETISGCFISVDTAVSRDHAEEASDFTNDEKKDLIPPEDIGHQTAYALLQEIQQGGVVDSTHQGLLFLLCALCLQDVSKIRVGQLSQHGIETLRNISEFLDLKFVIKPDPKTHTVILKCIGSGLRNLSRKLS 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0107 1083 SUPERFAMILY RING/U-box 460 522 - -
Lele09g0107 1083 FunFam RNA terminal phosphate cyclase like 1 716 902 - -
Lele09g0107 1083 Gene3D - 680 719 - -
Lele09g0107 1083 SMART ring_2 474 515 IPR001841 -
Lele09g0107 1083 SMART cue_7 681 722 IPR003892 GO:0043130
Lele09g0107 1083 Pfam RNA 3'-terminal phosphate cyclase 722 1057 IPR023797 -
Lele09g0107 1083 ProSiteProfiles Zinc finger RING-type profile. 474 516 IPR001841 -
Lele09g0107 1083 SUPERFAMILY EPT/RTPC-like 722 939 IPR013792 GO:0003824
Lele09g0107 1083 CDD RNA_Cyclase_Class_I 722 1059 IPR016443 GO:0005730|GO:0042254
Lele09g0107 1083 FunFam RNA terminal phosphate cyclase-like 1 889 1000 - -
Lele09g0107 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 447 526 IPR013083 -
Lele09g0107 1083 CDD CUE_RIN3_plant 682 719 IPR035667 -
Lele09g0107 1083 Gene3D - 722 1060 IPR037136 -
Lele09g0107 1083 ProSiteProfiles CUE domain profile. 681 723 IPR003892 GO:0043130
Lele09g0107 1083 TIGRFAM 18S_RNA_Rcl1p: 18S rRNA biogenesis protein RCL1 721 1082 IPR016443 GO:0005730|GO:0042254
Lele09g0107 1083 Pfam Ring finger domain 472 516 IPR001841 -
Lele09g0107 1083 ProSitePatterns RNA 3'-terminal phosphate cyclase signature. 862 872 IPR020719 -
Lele09g0107 1083 Pfam CUE domain 684 722 IPR003892 GO:0043130
Lele09g0107 1083 PANTHER RNA 3' TERMINAL PHOSPHATE CYCLASE 722 1082 IPR000228 GO:0006396
Lele09g0107 1083 Pfam RNA 3'-terminal phosphate cyclase (RTC), insert domain 888 1004 IPR013791 -
Lele09g0107 1083 Gene3D - 889 1000 IPR036553 -
Lele09g0107 1083 FunFam E3 ubiquitin protein ligase RIN2 447 526 - -
Lele09g0107 1083 MobiDBLite consensus disorder prediction 530 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0107 Lele-ChrLele09 752348 765787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0107 185 516 C3H Transcription Factor Family AT3G16090 27.072 1.89e-27 115