Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0100 ATGACATTAAGAAATGGTGTGGATGATGATGAAGAACAAGGACGATGGGAAAATCTGCCACCAGAATTGCTTGGGGACATAATAAAGAGAGTGGAAGAGACTGAGACATGTTGGCCTGCACGTGTTATTGTGTCTTGTGCTTCAGTTTGTAAGTCATGGAGAGCTATCACTAAGGAGATCGTTAAGGCTCCCGAGCTATCAGGACGACTCACTTTTCCCATCTCATTGAAGCAACCAGGGCCTCGAGATTCTCCAATCCAATGCTATATCAAAAGGAACAGAGAAACTTCTACTTATTTGTTGTACTTGGGTCCAGAGCCATCAGAGAACAAGAATGATAAGTTGTTGCTGGCTGCCAAAAAAAAACGAAGGATAAGAAATATAAAATATGTTATATCTTTAGTTGCTCATGACTTCAGTCGCTCCAGCAAGGCATATATTGGCAAACTCAGGTCTAATTTCTTGGATTACAAGTACCGTATATATGACCGTCAACTTCCACAACATGAATTTAATTATCAACCCAACAACAATCACTTTAATCATATAAGATCTCCCTCTAACAAGCTACGTAAGTACAACGTTGGTACCATTACGTACAAGACCAACATGATTCACAAAAGCAGATCTCACAGAGTCAAAGGTCCAGCAAAAATGGACTGCACAATCCTGACCATGAACTCGAACTCTATGGTGATGGAGCCTCTGAAACTTAAAAGAAAGGATCCATTGTGGGATGAACAGTGCCAATTCTGGCACCTAAACTTCAGACATCATGATACATTGGCATATTCTAATTTCCAGCTTGTTTCTGCCGCCGATGAAGAACAAGAAAAGCTTGTTTCTGCTCATGAAAAGATAATCTTGGAATTTGCTAAGATGGGAGCAGACTTGTTTGTTATGGTTCGCTGTTATCCACTCTCAGCATTTCAAGCCTCCTCCATCTGCCTCAGCAACTTTCTCGCTGACACAATTTATAGATATGGATCTGTAGAGAAGCTGAAGATGATCAGTAGATTTGATGCTAAAACAACTTGTGATTGA 1044 0.4042 MTLRNGVDDDEEQGRWENLPPELLGDIIKRVEETETCWPARVIVSCASVCKSWRAITKEIVKAPELSGRLTFPISLKQPGPRDSPIQCYIKRNRETSTYLLYLGPEPSENKNDKLLLAAKKKRRIRNIKYVISLVAHDFSRSSKAYIGKLRSNFLDYKYRIYDRQLPQHEFNYQPNNNHFNHIRSPSNKLRKYNVGTITYKTNMIHKSRSHRVKGPAKMDCTILTMNSNSMVMEPLKLKRKDPLWDEQCQFWHLNFRHHDTLAYSNFQLVSAADEEQEKLVSAHEKIILEFAKMGADLFVMVRCYPLSAFQASSICLSNFLADTIYRYGSVEKLKMISRFDAKTTCD 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0100 347 SUPERFAMILY F-box domain 13 59 IPR036047 GO:0005515
Lele09g0100 347 Gene3D Tubby Protein; Chain A 73 324 IPR025659 -
Lele09g0100 347 PRINTS Tubby superfamily signature 305 327 IPR000007 -
Lele09g0100 347 PRINTS Tubby superfamily signature 284 303 IPR000007 -
Lele09g0100 347 PRINTS Tubby superfamily signature 130 146 IPR000007 -
Lele09g0100 347 PRINTS Tubby superfamily signature 146 170 IPR000007 -
Lele09g0100 347 PRINTS Tubby superfamily signature 238 255 IPR000007 -
Lele09g0100 347 Pfam Tub family 76 230 IPR000007 -
Lele09g0100 347 Pfam Tub family 232 320 IPR000007 -
Lele09g0100 347 Gene3D - 9 66 - -
Lele09g0100 347 SUPERFAMILY Tubby C-terminal domain-like 64 321 IPR025659 -
Lele09g0100 347 PANTHER TUBBY-RELATED 10 320 - -
Lele09g0100 347 Pfam F-box domain 16 61 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0100 Lele-ChrLele09 705782 710842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0100 9 320 TUB Transcription Factor Family AT2G18280 47.727 5.22e-104 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele09g0100 Tub 9.7e-36 CL0395