Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0091 ATGCAGAGGAGGAAAAAGAGCAAAAATGGTAGCAAGATCTGTATGATTTGCCAAAGGTGCTTTGCTAACGGAAAAGCTAGGGGAGGGCATATGAGGTCTCACTTTGCGAAACTTCCCATCCCTCCTAAGCTTGCTCCAATACCTCGAATTGCAGATCACGTACCATCGGAAATATCCAAAGTTGATGTTGATGGTGGTTCATCCTCAAACCATCAGCGTTCGATCTCCTTTTCTTCACCAAAAAGTCATCTTATGAAGAAATCGCCAGCTGAACAGAGCTTTCACTCCATGAATCAAGACTTTGCAGCAAGAGTTTCGAAACCCAGCGATGACCAAGGAAGCAGATCAGATCAATCTTACATGTCTGGAAGGAGGTCTAAACGTTGCCGTAAAATTGATGATGTAAAAAGAGAATTAGTTTTGCCATCTAAGACAAAACTTGATAAAGATAATCCAAACCAAACATGTTCGATCTTTCATTCTTACTTTCTGGCTAGAGATGCTGCTTTGACTCTCATATGGCTTTCCAAGGCTAAATGGCCTGAAGGCAGAGAATTAATCAAGAAGAAACAAAAAGTGAAGGATGCGAACGAACAAGAAGACTCATACATGGAGGTTCACTCTCATGGCGGGAGGTTCGTGTGCGAGATGTGCAAGAAAGTTTTCGGATCTTACCAAGCACTTGGTGGGCACAAAGCAAGCCACAAAAAATTCATCAAGAATGATCAATTTGTGTTAGATGGCGAATTTGATGAAGAAAACGGGGATGTTGGTAACAAGGGGAACGATGATGATGTTCTTGAAGATCCAAAAGTGTTGAAGTGCCCCCACTGCTCCAAAGTGTTTGGGTCCAGCCAAGGACTTGGAAGACACAAGAAGATACACACTCCCAATGCTATGAAATTTGGGGACAATGACATAGATCTTAACTCACCTGCTCCAGGGGAAGATTATCGATGA 960 0.426 MQRRKKSKNGSKICMICQRCFANGKARGGHMRSHFAKLPIPPKLAPIPRIADHVPSEISKVDVDGGSSSNHQRSISFSSPKSHLMKKSPAEQSFHSMNQDFAARVSKPSDDQGSRSDQSYMSGRRSKRCRKIDDVKRELVLPSKTKLDKDNPNQTCSIFHSYFLARDAALTLIWLSKAKWPEGRELIKKKQKVKDANEQEDSYMEVHSHGGRFVCEMCKKVFGSYQALGGHKASHKKFIKNDQFVLDGEFDEENGDVGNKGNDDDVLEDPKVLKCPHCSKVFGSSQGLGRHKKIHTPNAMKFGDNDIDLNSPAPGEDYR 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0091 319 MobiDBLite consensus disorder prediction 59 129 - -
Lele09g0091 319 Gene3D Classic Zinc Finger 186 299 - -
Lele09g0091 319 ProSitePatterns Zinc finger C2H2 type domain signature. 275 295 IPR013087 -
Lele09g0091 319 SUPERFAMILY beta-beta-alpha zinc fingers 213 295 IPR036236 -
Lele09g0091 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 300 IPR013087 -
Lele09g0091 319 Pfam C2H2-type zinc finger 274 295 - -
Lele09g0091 319 Pfam C2H2-type zinc finger 212 237 - -
Lele09g0091 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 235 IPR013087 -
Lele09g0091 319 SMART c2h2final6 12 34 IPR013087 -
Lele09g0091 319 SMART c2h2final6 273 295 IPR013087 -
Lele09g0091 319 SMART c2h2final6 213 235 IPR013087 -
Lele09g0091 319 MobiDBLite consensus disorder prediction 285 319 - -
Lele09g0091 319 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Lele09g0091 319 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Lele09g0091 319 MobiDBLite consensus disorder prediction 62 105 - -
Lele09g0091 319 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 12 317 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0091 Lele-ChrLele09 609482 610441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0091 14 317 C2H2 Transcription Factor Family AT3G60580 29.358 2.47e-23 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele09g0091 zf-C2H2_6 1.2e-10 CL0361