Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0089 ATGGTGTCAGGGTCCGGCGTGTGCGCGAAGCGCGTGGTTGTCGACGCGCGCCACCACATGCTAGGTAGGCTCGCTTCGATCGTGGCCAAGGAGCTTCTCAACGGCCAGAAGGTGGTGGTGGTGAGGTGCGAGGAGATCTGTATCTCCGGTGGCTTGGTCCGTCAGAAGATGAAGTACATGCGATTCCTCCGTAAGCGGATGAATACTAAGCCTTCACATGGTCCTATCCACTTTCGTGCCCCTTCCAAGATTTTTTGGCGCACTGTTCGTGGAATGATACCACATAAGACAAAGCGTGGGGCCGAAGCTCTTGCAAGATTGAAGGTCTATGAAGGCATTCCTCCCCCATATGACAAAACGAAGAGGATGGTTGTCCCAGATGCCCTCAAGGTGTTGAGGCTTCAGAAAGGACACAAGTATTGCTTGGTGGGTAAATTGTCTTCCGAAGTTGGATGGAACTATTATGATACCATCCGGGAATTGGAGAAGAAGAGAAAAGAGAGAGCACAATTGGTTTATGAGAAGAAGAAGCAGATTACTAGATTAAGGTTGAAGGCTGAGAAAATTGCCGAGTAG 576 0.5 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAEALARLKVYEGIPPPYDKTKRMVVPDALKVLRLQKGHKYCLVGKLSSEVGWNYYDTIRELEKKRKERAQLVYEKKKQITRLRLKAEKIAE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0089 191 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lele09g0089 191 Gene3D Ribosomal protein L13 7 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lele09g0089 191 PANTHER RIBOSOMAL PROTEIN L13 2 178 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele09g0089 191 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele09g0089 191 Gene3D - 156 191 - -
Lele09g0089 191 TIGRFAM L13_A_E: ribosomal protein uL13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Lele09g0089 191 FunFam 60S ribosomal protein L13a-4 8 154 - -
Lele09g0089 191 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Lele09g0089 191 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele09g0089 191 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0089 Lele-ChrLele09 599852 601245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0089 1 191 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 87.435 4.83e-128 357